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[182011_at]

Description F40B1.2 /REP_DB=WormBase Gene ID /WP=CE10158 /TR=O76569 /GB=AAC26269.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 29
(3)
A 		13.6
(-1.8)
A 		21.2
(0.6)
A 		9.7
(-3)
A 		19
B 31.7
(-2.2)
A 		44.3
(3)
A 		29.7
(-3)
A 		32.3
(-1.9)
A 		15
C 9.4
(-3)
A 		40.1
(-0.4)
A 		9.7
(-3)
A 		81.5
(3)
A 		72
avr 23.4
(-2.1) 		32.7
(0.6) 		20.2
(-3) 		41.2
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 34.1
(3)
A 		12.7
(-1.4)
A 		24
(0.9)
A 		5.3
(-2.9)
A 		23.5
(0.8)
A 		4.8
(-3)
A 		29
B 9.9
(-2.5)
A 		17.5
(-0.4)
A 		26.9
(2.2)
A 		30
(3)
A 		25.5
(1.8)
A 		8.1
(-3)
A 		22
C 7.2
(-3)
A 		23.2
(-1.6)
A 		75.3
(3)
A 		47.4
(0.5)
A 		10.1
(-2.7)
A 		57.1
(1.4)
A 		68
avr 17.1
(-3) 		17.8
(-2.8) 		42.1
(3) 		27.6
(-0.5) 		19.7
(-2.4) 		23.3
(-1.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.6
(3)
A 		3
(-2)
A 		5.5
(-0.3)
A 		1.4
(-3)
A 		9
B 10.1
(1.8)
A 		10.9
(3)
A 		6.9
(-3)
A 		6.9
(-3)
A 		4
C 3.1
(-3)
A 		11.5
(1.8)
A 		3.4
(-2.8)
A 		13.7
(3)
A 		11
avr 7.9
(1.9) 		8.5
(3) 		5.3
(-3) 		7.3
(0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.3
(2.2)
A 		4.5
(0.4)
A 		5.2
(1.1)
A 		1.3
(-2.9)
A 		7.1
(3)
A 		1.2
(-3)
A 		6
B 3.4
(-2.7)
A 		5.8
(-0.7)
A 		6.5
(-0.2)
A 		7.9
(1)
A 		10.4
(3)
A 		3
(-3)
A 		7
C 2.7
(-3)
A 		7.1
(-1.4)
A 		19.2
(3)
A 		9.5
(-0.5)
A 		3.3
(-2.8)
A 		19.1
(3)
A 		17
avr 4.1
(-3) 		5.8
(-1.4) 		10.3
(3) 		6.2
(-1) 		6.9
(-0.3) 		7.8
(0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5901
Sequence Type Exemplar sequence
Representative Public ID F40B1.2 NCBI
Target Description F40B1.2 /REP_DB=WormBase Gene ID /WP=CE10158 /TR=O76569 /GB=AAC26269.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061887(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061887 NCBI Caenorhabditis elegans F40B1.2 (F40B1.2) mRNA, complete cds. 10/11 None
GENEFINDER00000002105 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2522565:2524476:-1 11/11 None
F40B1.2 ENSEMBL cdna:known chromosome:CEL140:II:2523703:2524452:-1 gene:F40B1.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2523701-2524475(-) 100.0 100.0
Public Domain and Genome References
Ensembl F40B1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494288 F40B1.2 [Caenorhabditis elegans] 1.0E-101
blast NP_494288 F40B1.2 [Caenorhabditis elegans] 7.0E-96
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 3.0E-63
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 1.0E-60
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 4.0E-46
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 2.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 7.4E-14
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-23
Pfam IPR002083 EMBL-EBI MATH 7.4E-14
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-23
Sequence
Target Sequence 
>C. ELEGANS:182011_AT
tttcagctctcgcacattttcaagaacgtatcaaagcaattaatgattggtcatcgcgaa
gcacgtttgcgtgtttatctgtgctgtggacatccggcggaaaaggacaaagtcttggga
atcagtgtggattgtaacttcaagctcaccacttcgtcgggaaagtgcattcaaagattt
aattcgtgccatttcgagactccaaaatcccatattctaaatcagtttattgcttgggac
acattgatgacggattatttggttgatgatagtatcattattgaaattaatgccaagatt
acaaaaatgcctggaatcttgaagaaacagctgaaaagctttgaaaaatcaaatgaagaa
ttttccgatgtgattctcgcggttggagataagaagttcttcgttctcaagaagttcctc
gcctctcattcttcatacttcaagactcttcttctcggaaatttcgaagaagctgataag
ggagaagtcacactccacggcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCAGCTCTCGCACATTTTCAAGA 330 673 34 Antisense
ATTGGTCATCGCGAAGCACGTTTGC 484 3 79 Antisense
ACGTTTGCGTGTTTATCTGTGCTGT 304 95 96 Antisense
TTTATCTGTGCTGTGGACATCCGGC 219 673 107 Antisense
GGATTGTAACTTCAAGCTCACCACT 594 507 162 Antisense
GCTCACCACTTCGTCGGGAAAGTGC 265 299 177 Antisense
AATTCGTGCCATTTCGAGACTCCAA 305 177 214 Antisense
GAGACTCCAAAATCCCATATTCTAA 524 393 229 Antisense
ATTGCTTGGGACACATTGATGACGG 194 5 262 Antisense
TCCGATGTGATTCTCGCGGTTGGAG 401 593 397 Antisense
AGGGAGAAGTCACACTCCACGGCAT 298 57 512 Antisense
Sequence Source Affymetrix Proprietary Database