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[182010_s_at]

Description K10D6.2A /REP_DB=WormBase Gene ID /WP=CE23866 /TR=O45670 /GB=CAA98514.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 52      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 164.9
(1.4)
P 		207.8
(3)
P 		117.8
(-0.4)
P 		49.7
(-3)
A 		158
B 185.1
(3)
P 		169.9
(2.5)
P 		103.1
(0.3)
P 		3.7
(-3)
A 		181
C 151.1
(1.9)
P 		184.5
(3)
P 		143.8
(1.6)
P 		7.5
(-3)
A 		177
avr 167
(2.3) 		187.4
(3) 		121.6
(0.6) 		20.3
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 300.6
(3)
P 		136.5
(-0.9)
P 		159.1
(-0.3)
P 		105.9
(-1.6)
P 		46.7
(-3)
P 		58.6
(-2.7)
A 		254
B 148.3
(1.9)
P 		167
(3)
P 		62.2
(-3)
P 		94.3
(-1.2)
P 		66.5
(-2.8)
P 		70.9
(-2.5)
A 		105
C 192.4
(3)
P 		166.1
(1.9)
P 		173.8
(2.2)
P 		119
(-0.2)
M 		72.5
(-2.2)
P 		54.5
(-3)
A 		138
avr 213.8
(3) 		156.5
(0.7) 		131.7
(-0.2) 		106.4
(-1.2) 		61.9
(-3) 		61.3
(-3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 60
(3)
P 		45.1
(1.3)
P 		30.8
(-0.3)
P 		7.3
(-3)
A 		53
B 59
(3)
P 		42
(1.2)
P 		23.9
(-0.6)
P 		0.8
(-3)
A 		58
C 50
(2.7)
P 		53
(3)
P 		50.1
(2.7)
P 		1.3
(-3)
A 		52
avr 56.3
(3) 		46.7
(1.9) 		34.9
(0.6) 		3.1
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 55.4
(3)
P 		48.6
(2)
P 		34.6
(-0)
P 		26.9
(-1.1)
P 		14.1
(-3)
P 		14.3
(-3)
A 		41
B 51.6
(2.4)
P 		55.6
(3)
P 		15.1
(-3)
P 		25
(-1.5)
P 		27
(-1.2)
P 		26.4
(-1.3)
A 		41
C 71.3
(3)
P 		50.7
(0.7)
P 		44.2
(-0.1)
P 		23.9
(-2.4)
M 		23.5
(-2.4)
P 		18.3
(-3)
A 		53
avr 59.4
(3) 		51.6
(1.8) 		31.3
(-1.2) 		25.3
(-2.2) 		21.5
(-2.7) 		19.7
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182010_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14215
Sequence Type Exemplar sequence
Representative Public ID K10D6.2A NCBI
Target Description K10D6.2A /REP_DB=WormBase Gene ID /WP=CE23866 /TR=O45670 /GB=CAA98514.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073442 NCBI Caenorhabditis elegans K10D6.2a (K10D6.2) mRNA, complete cds. 11/11 A 
K10D6.2a ENSEMBL cdna:known chromosome:CEL140:V:11196390:11198587:-1 gene:K10D6.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073443 6/11 Cross Hyb Matching Probes None
K10D6.2c 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179548 3 1 NM_073441 171905_x_at (11)
NM_073442 171905_x_at (10), 182010_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11196534-11198587(-) 100.0 100.0
Public Domain and Genome References
Ensembl K10D6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98514 Hypothetical protein K10D6.2a [Caenorhabditis elegans] ref|NP_505843.1| K10D6.2a [Caenorhabditis elegans] 0.0
blast CAA98513 Hypothetical protein K10D6.2b [Caenorhabditis elegans] ref|NP_505842.1| K10D6.2b [Caenorhabditis elegans] 1.0E-134
blast CAE75189 Hypothetical protein CBG23133 [Caenorhabditis briggsae] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505843.1 5 15-37,114-136,146-168,189-211,235-257
K10D6.2a 5 15-37,114-136,146-168,189-211,235-257
Sequence
Target Sequence 
>C. ELEGANS:182010_S_AT
ttgtgtgtgtgctttgtgttttgttggtgtgcatcccttagttttcagaagatacgaaga
tcgtcgtcagcagcaacaacagtatcatcacagcagcagatcaacgtggatcaactaatt
ttcaacttcttcatcactttctttctatccctttgttttgagagcactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGTGTGTGCTTTGTGTTTTGTT 257 707 739 Antisense
GTGTTTTGTTGGTGTGCATCCCTTA 466 485 754 Antisense
TTGTTGGTGTGCATCCCTTAGTTTT 695 703 759 Antisense
GTGTGCATCCCTTAGTTTTCAGAAG 612 487 765 Antisense
GCATCCCTTAGTTTTCAGAAGATAC 322 305 769 Antisense
AGATACGAAGATCGTCGTCAGCAGC 689 65 788 Antisense
GCAACAACAGTATCATCACAGCAGC 358 319 811 Antisense
ATCACAGCAGCAGATCAACGTGGAT 559 27 825 Antisense
GTGGATCAACTAATTTTCAACTTCT 127 489 844 Antisense
TTTCTTTCTATCCCTTTGTTTTGAG 79 673 876 Antisense
TATCCCTTTGTTTTGAGAGCACTCA 203 659 884 Antisense
Sequence Source Affymetrix Proprietary Database