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[182007_at]

Description K12H6.7 /REP_DB=WormBase Gene ID /WP=CE20010 /TR=Q9N5G8 /GB=AAF39942.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 19.9
(-1.6)
A 		22.9
(-1.3)
A 		6
(-3)
A 		65.6
(3)
A 		60
B 14.2
(-1.8)
A 		18.5
(-1.3)
A 		4.3
(-3)
A 		53.2
(3)
P 		49
C 24.8
(-1.4)
A 		11.9
(-2.6)
A 		8.2
(-3)
A 		70.2
(3)
P 		62
avr 19.6
(-1.6) 		17.8
(-1.8) 		6.2
(-3) 		63
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 28.4
(-1)
A 		5.3
(-3)
A 		26.4
(-1.2)
A 		35.6
(-0.4)
A 		51.2
(0.9)
A 		75.3
(3)
A 		70
B 32.4
(0)
P 		43.6
(2)
A 		37.8
(1)
A 		15.2
(-3)
A 		29.1
(-0.6)
A 		49.4
(3)
P 		34
C 13.5
(-1.8)
A 		27.8
(-0.1)
A 		4.1
(-3)
A 		42.2
(1.7)
A 		4.5
(-3)
A 		53
(3)
A 		49
avr 24.8
(-2.7) 		25.6
(-2.5) 		22.8
(-3) 		31
(-1.6) 		28.3
(-2.1) 		59.2
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.2
(1.2)
A 		5
(-0.5)
A 		1.6
(-3)
A 		9.6
(3)
A 		8
B 4.5
(-1)
A 		4.6
(-0.9)
A 		1
(-3)
A 		11.3
(3)
P 		10
C 8.2
(0.6)
A 		3.4
(-2.6)
A 		2.8
(-3)
A 		11.8
(3)
P 		9
avr 6.6
(0.2) 		4.3
(-1.4) 		1.8
(-3) 		10.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5.2
(-1.8)
A 		1.9
(-3)
A 		5.8
(-1.6)
A 		9
(-0.4)
A 		15.4
(1.9)
A 		18.3
(3)
A 		16
B 11.3
(0)
P 		14.5
(1.4)
A 		9.2
(-0.8)
A 		4
(-3)
A 		11.8
(0.3)
A 		18.4
(3)
P 		14
C 5
(-1.6)
A 		8.5
(-0.3)
A 		1
(-3)
A 		8.5
(-0.3)
A 		1.4
(-2.9)
A 		17.7
(3)
A 		17
avr 7.2
(-2.1) 		8.3
(-1.6) 		5.3
(-3) 		7.2
(-2.1) 		9.5
(-1) 		18.1
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4100
Sequence Type Exemplar sequence
Representative Public ID K12H6.7 NCBI
Target Description K12H6.7 /REP_DB=WormBase Gene ID /WP=CE20010 /TR=Q9N5G8 /GB=AAF39942.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061978 NCBI Caenorhabditis elegans K12H6.7 (K12H6.7) mRNA, complete cds. 11/11 None
K12H6.7 ENSEMBL cdna:known chromosome:CEL140:II:2835050:2836617:-1 gene:K12H6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2835048-2836616(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H6.7
Entrez Gene 187345 Entrez gene
SwissProt Q9N5G8 EMBL-EBI
WormBase CE20010 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494379 K12H6.7 [Caenorhabditis elegans] gb|AAF39942.1| Hypothetical protein K12H6.7 [Caenorhabditis elegans] 1.0E-165
blast AAC68801 Hypothetical protein F40G9.9 [Caenorhabditis elegans] ref|NP_497166.2| F40G9.9 [Caenorhabditis elegans] 2.0E-16
blast AAF39767 Hypothetical protein C39B5.2 [Caenorhabditis elegans] ref|NP_497518.1| C39B5.2 [Caenorhabditis elegans] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182007_AT
atgtggacgatctcacttgtactcctgacattaagaatatgaaagagagctatttagcga
ctataaaatctgaaagcctcaatgcaagcaccattgacaactttttatctaaaaaaacaa
gcattgaaaagcttacattaggaatgaaagttctcgataattttcaagaggattcagcta
tatttcgaatgaaatacttttggttcacttattccctagagcatgctccaattgtgctct
ccaagtttcaaggaactcatttatggatgaccgatgccaatataaaaaatgaagatatca
tttcatttttgaacacttggcaaaactcggagtgcgatcggaaaatatttgaaataaagg
tttctgaggggatgaatcctttgaatccggatattgtgtatgaagatattgacgtcagcg
attgggatcctgcagagagaccgaaagagtttaattttgtgtcgacatttttcccagaaa
acttcaacaaagtctatgattgttccacgtggatggatattaaaagatctggcgacggaa
aaatagcatcaatctgtatcacttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGGACGATCTCACTTGTACTCC 214 49 263 Antisense
ATCTCACTTGTACTCCTGACATTAA 357 31 272 Antisense
CTGAAAGCCTCAATGCAAGCACCAT 637 237 332 Antisense
CAAGCACCATTGACAACTTTTTATC 414 185 347 Antisense
TACTTTTGGTTCACTTATTCCCTAG 56 643 457 Antisense
ACTTATTCCCTAGAGCATGCTCCAA 251 103 469 Antisense
CTCCAATTGTGCTCTCCAAGTTTCA 151 233 488 Antisense
GACGTCAGCGATTGGGATCCTGCAG 76 379 673 Antisense
GGGATCCTGCAGAGAGACCGAAAGA 429 495 686 Antisense
TTTGTGTCGACATTTTTCCCAGAAA 574 663 718 Antisense
AATAGCATCAATCTGTATCACTTCT 571 171 804 Antisense
Sequence Source Affymetrix Proprietary Database