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[182006_at]

Description Y46G5A.3 /REP_DB=WormBase Gene ID /WP=CE24300 /TR=Q9U2G2 /GB=CAB60349.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 51      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 25.5
(-3)
A 		66.7
(3)
A 		65
(2.8)
A 		28.3
(-2.6)
A 		41
B 61.2
(-0.4)
A 		84
(3)
A 		45.4
(-2.8)
A 		44.1
(-3)
A 		40
C 65.1
(3)
A 		54
(-0.5)
A 		62.8
(2.3)
A 		45.9
(-3)
A 		19
avr 50.6
(-0.7) 		68.2
(3) 		57.7
(0.8) 		39.4
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 51.8
(-0.8)
M 		82.1
(2.6)
A 		49.5
(-1.1)
A 		85.7
(3)
A 		32.1
(-3)
A 		34.1
(-2.8)
A 		54
B 63.3
(1.8)
A 		71.8
(3)
A 		49.9
(-0.1)
A 		29.5
(-3)
A 		29.5
(-3)
A 		34.3
(-2.3)
A 		42
C 74.7
(3)
A 		42.9
(-0.2)
A 		14.8
(-3)
A 		19.5
(-2.5)
A 		30.6
(-1.4)
A 		70.4
(2.6)
A 		60
avr 63.3
(2.6) 		65.6
(3) 		38.1
(-1.7) 		44.9
(-0.6) 		30.7
(-3) 		46.3
(-0.3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.3
(-0.6)
A 		14.5
(1.8)
A 		17
(3)
A 		4.1
(-3)
A 		13
B 19.5
(2.3)
A 		20.8
(3)
A 		10.5
(-2.4)
A 		9.4
(-3)
A 		11
C 21.5
(2.8)
A 		15.5
(0.3)
A 		21.9
(3)
A 		7.7
(-3)
A 		14
avr 16.8
(2.9) 		16.9
(3) 		16.5
(2.8) 		7.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.6
(-2.6)
M 		29.2
(3)
A 		10.8
(-2.3)
A 		21.7
(0.8)
A 		9.7
(-2.6)
A 		8.3
(-3)
A 		21
B 22
(2.3)
A 		23.9
(3)
A 		12.1
(-1.4)
A 		7.8
(-3)
A 		12
(-1.4)
A 		12.8
(-1.1)
A 		16
C 27.7
(3)
A 		13.1
(-0.7)
A 		3.8
(-3)
A 		3.9
(-3)
A 		9.9
(-1.5)
A 		23.6
(2)
A 		24
avr 19.8
(2) 		22.1
(3) 		8.9
(-3) 		11.1
(-2) 		10.5
(-2.3) 		14.9
(-0.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3162
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.3 NCBI
Target Description Y46G5A.3 /REP_DB=WormBase Gene ID /WP=CE24300 /TR=Q9U2G2 /GB=CAB60349.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027263(11), NM_001027264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027263 NCBI Caenorhabditis elegans Y46G5A.1a (Y46G5A.1) mRNA, complete cds. 11/11 None
NM_001027264 NCBI Caenorhabditis elegans Y46G5A.1b (Y46G5A.1) mRNA, complete cds. 11/11 None
SNAP00000038984 ENSEMBL cdna:SNAP chromosome:CEL140:II:12696184:12704076:1 11/11 None
GENEFINDER00000039022 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12694208:12701766:1 11/11 None
Y46G5A.1a ENSEMBL cdna:known chromosome:CEL140:II:12694308:12725371:1 gene:Y46G5A.1 11/11 A 
Y46G5A.1b.1 ENSEMBL cdna:known chromosome:CEL140:II:12694349:12725371:1 gene:Y46G5A.1 11/11 None
Y46G5A.1b.2 ENSEMBL cdna:known chromosome:CEL140:II:12694349:12725358:1 gene:Y46G5A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12698817-12700720(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y46G5A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60374 Hypothetical protein Y46G5A.1a [Caenorhabditis elegans] ref|NP_001022434.1| Y46G5A.1a [Caenorhabditis elegans] 0.0
blast CAE45741 Hypothetical protein Y46G5A.1b [Caenorhabditis elegans] ref|NP_001022435.1| Y46G5A.1b [Caenorhabditis elegans] 0.0
blast CAE63457 Hypothetical protein CBG07920 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 2.1E-27
Sequence
Target Sequence 
>C. ELEGANS:182006_AT
ggaggatatccacgtgttccagttccacgtcactcaccgtcgtttacgtcatcggcgaca
gtttacccgttgccgggtactggtggacggccacgattcggaagtgatgctcatcgccat
ctatacgaagaagttccaatgggcggtggtggagggccgtctgtgacaaacggaggctac
cgtagtcctggaggaccaccatatggctcggcgagcacaaatatgagggaaacggcgatt
cttgacgattatgacaatgtgccaagcgagtttttggcggagaatgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGATATCCACGTGTTCCAGTTC 660 515 37 Antisense
CACCGTCGTTTACGTCATCGGCGAC 415 199 71 Antisense
ATCGGCGACAGTTTACCCGTTGCCG 272 31 87 Antisense
GTTGCCGGGTACTGGTGGACGGCCA 67 239 105 Antisense
GTGGACGGCCACGATTCGGAAGTGA 657 489 119 Antisense
GGAAGTGATGCTCATCGCCATCTAT 443 531 136 Antisense
GAAGAAGTTCCAATGGGCGGTGGTG 39 341 163 Antisense
GGAGGGCCGTCTGTGACAAACGGAG 595 513 187 Antisense
AACGGAGGCTACCGTAGTCCTGGAG 674 141 205 Antisense
GGGAAACGGCGATTCTTGACGATTA 542 491 263 Antisense
AAGCGAGTTTTTGGCGGAGAATGTG 11 151 300 Antisense
Sequence Source Affymetrix Proprietary Database