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[182005_at]

Description F56H6.12 /REP_DB=WormBase Gene ID /WP=CE25912 /TR=O45590 /GB=CAB04501.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 59      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.3
(-1.7)
A 		11.2
(-2.8)
A 		17.2
(3)
A 		11
(-3)
A 		6
B 6.4
(-2.7)
A 		13.3
(0.8)
A 		17.8
(3)
A 		5.8
(-3)
A 		12
C 14.4
(3)
A 		12.1
(1.2)
A 		6.8
(-3)
A 		7.5
(-2.4)
A 		8
avr 11
(0) 		12.2
(1.2) 		13.9
(3) 		8.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 3.1
(-3)
A 		6.9
(-2.5)
A 		53.3
(3)
A 		12.2
(-1.9)
A 		11.6
(-2)
A 		13.8
(-1.7)
A 		50
B 8.5
(-2.4)
A 		17.8
(-1.1)
A 		46.8
(3)
A 		5.3
(-2.8)
A 		4.2
(-3)
A 		6
(-2.7)
A 		43
C 13.4
(2.2)
A 		5.9
(-1.5)
A 		7.3
(-0.8)
A 		3
(-3)
A 		6.2
(-1.4)
A 		14.9
(3)
A 		12
avr 8.3
(-2.7) 		10.2
(-2.3) 		35.8
(3) 		6.8
(-3) 		7.3
(-2.9) 		11.6
(-2) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.5
(3)
A 		2.4
(-1.3)
A 		4.5
(3)
A 		1.6
(-3)
A 		3
B 2
(-1.3)
A 		3.3
(1.3)
A 		4.1
(3)
A 		1.2
(-3)
A 		3
C 4.8
(3)
A 		3.5
(0.8)
A 		2.4
(-1.1)
A 		1.3
(-3)
A 		4
avr 3.8
(3) 		3.1
(1.3) 		3.7
(2.8) 		1.4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.5
(-2)
A 		11.6
(3)
A 		3.1
(-1.6)
A 		3.5
(-1.4)
A 		3.3
(-1.5)
A 		11
B 2.9
(-2.1)
A 		5.9
(-0.3)
A 		11.4
(3)
A 		1.4
(-3)
A 		1.7
(-2.8)
A 		2.2
(-2.5)
A 		10
C 5
(3)
A 		1.8
(-1.4)
A 		1.9
(-1.2)
A 		0.6
(-3)
A 		2
(-1.1)
A 		5
(3)
A 		4
avr 2.8
(-2) 		3.4
(-1.5) 		8.3
(3) 		1.7
(-3) 		2.4
(-2.4) 		3.5
(-1.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2540
Sequence Type Exemplar sequence
Representative Public ID F56H6.12 NCBI
Target Description F56H6.12 /REP_DB=WormBase Gene ID /WP=CE25912 /TR=O45590 /GB=CAB04501.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060711 NCBI Caenorhabditis elegans F56H6.12 (F56H6.12) mRNA, complete cds. 11/11 None
SNAP00000044661 ENSEMBL cdna:SNAP chromosome:CEL140:I:12320457:12323017:1 11/11 None
GENEFINDER00000044669 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12320457:12323017:1 11/11 None
F56H6.12 ENSEMBL cdna:known chromosome:CEL140:I:12320457:12323017:1 gene:F56H6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12320387-12322948(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H6.12
Entrez Gene 186422 Entrez gene
SwissProt O45590 EMBL-EBI
WormBase CE25912 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04501 Hypothetical protein F56H6.12 [Caenorhabditis elegans] ref|NP_493112.1| F56H6.12 [Caenorhabditis elegans] 0.0
blast CAB04500 Hypothetical protein F56H6.11 [Caenorhabditis elegans] ref|NP_493111.1| F56H6.11 [Caenorhabditis elegans] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493112.1 10 7-24,28-50,73-92,132-154,167-186,191-208,250-272,298-320,329-346,356-375
F56H6.12 10 7-24,28-50,73-92,132-154,167-186,191-208,250-272,298-320,329-346,356-375
SNAP00000044661 10 7-24,28-50,73-92,132-154,167-186,191-208,250-272,298-320,329-346,356-375
GENEFINDER00000044669 10 7-24,28-50,73-92,132-154,167-186,191-208,250-272,298-320,329-346,356-375
Sequence
Target Sequence 
>C. ELEGANS:182005_AT
atcctatggatgtgagcccctgtaccccagtttgctgctcgagaggtgttgggcaaactt
ccatgtatttgcacagcgtattgaggaggagaagccagattatgcatttatcttaacacg
gcacatatctattggggaaccatttgctgcaaatgtaacaagctttgacaaagatttcat
ctaccaaaccatgaaagaacagatgttaaaactcacgaaaaacataaagtacaagctcta
cattttggatgcaattccccgaacaaagtacgtcgtgtcccagatagcgccgatggttaa
aagtggagcaaatctcaccgatattgataagcttctagtcgagaccgatctctacaaaat
ggcgcggaagcgacacgctcaactaatcaaggattgcaatgggaaatgtgagcttgtgga
ttatctaccagagttttacaataagaaaaccggcacttttcggtactttgatgaaaaagg
attttcctacgtgacggcacacttgcatctatcgccatatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTATGGATGTGAGCCCCTGTAC 666 29 1449 Antisense
CCCCAGTTTGCTGCTCGAGAGGTGT 588 261 1473 Antisense
GAGAGGTGTTGGGCAAACTTCCATG 679 395 1489 Antisense
AACTTCCATGTATTTGCACAGCGTA 374 139 1504 Antisense
GGATGCAATTCCCCGAACAAAGTAC 56 511 1695 Antisense
AAAGTACGTCGTGTCCCAGATAGCG 76 121 1713 Antisense
GTGGAGCAAATCTCACCGATATTGA 147 491 1751 Antisense
AAGCTTCTAGTCGAGACCGATCTCT 690 149 1777 Antisense
AAATGGCGCGGAAGCGACACGCTCA 299 121 1805 Antisense
CTACGTGACGGCACACTTGCATCTA 152 225 1935 Antisense
CACACTTGCATCTATCGCCATATGG 422 195 1946 Antisense
Sequence Source Affymetrix Proprietary Database