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[182004_at]

Description F19C7.5 /REP_DB=WormBase Gene ID /WP=CE04419 /TR=Q19587 /GB=AAA83506.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 44.2
(0.2)
A 		6.5
(-3)
A 		20.7
(-1.8)
A 		77.7
(3)
A 		71
B 24.1
(0.2)
A 		37.3
(2.3)
A 		3.8
(-3)
A 		41.7
(3)
A 		38
C 48.9
(-0.6)
A 		52.3
(-0.4)
A 		6.4
(-3)
A 		114.1
(3)
A 		108
avr 39.1
(-0.4) 		32
(-1.1) 		10.3
(-3) 		77.8
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 40.8
(0.3)
A 		11.7
(-3)
A 		45
(0.8)
A 		13.1
(-2.8)
A 		64.1
(3)
A 		29
(-1)
A 		52
B 28.4
(-0.1)
A 		45.7
(2.1)
A 		4.6
(-3)
A 		5.6
(-2.9)
A 		33.5
(0.6)
A 		53.2
(3)
A 		49
C 29.1
(1.5)
A 		37.5
(2.9)
A 		34.8
(2.4)
A 		2.6
(-3)
A 		36.7
(2.7)
A 		38.3
(3)
A 		36
avr 32.8
(1.1) 		31.6
(0.9) 		28.1
(0.3) 		7.1
(-3) 		44.8
(3) 		40.2
(2.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16.1
(3)
A 		1.4
(-3)
A 		5.4
(-1.4)
A 		11.4
(1.1)
A 		15
B 7.7
(1.9)
A 		9.2
(3)
A 		0.9
(-3)
A 		8.9
(2.8)
A 		8
C 16.2
(1.9)
A 		15
(1.5)
A 		2.2
(-3)
A 		19.2
(3)
A 		17
avr 13.3
(3) 		8.5
(0.3) 		2.8
(-3) 		13.2
(2.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.5
(-1.4)
A 		4.2
(-2.7)
A 		9.8
(-0.6)
A 		3.3
(-3)
A 		19.4
(3)
A 		7.1
(-1.6)
A 		16
B 9.9
(-0.2)
A 		15.2
(1.5)
A 		1.1
(-3)
A 		1.5
(-2.9)
A 		13.6
(1)
A 		19.9
(3)
A 		19
C 10.8
(2)
A 		11.4
(2.3)
A 		8.9
(1.1)
A 		0.5
(-3)
A 		11.9
(2.6)
A 		12.8
(3)
A 		12
avr 9.4
(0.5) 		10.3
(0.9) 		6.6
(-0.8) 		1.8
(-3) 		15
(3) 		13.3
(2.2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10643
Sequence Type Exemplar sequence
Representative Public ID F19C7.5 NCBI
Target Description F19C7.5 /REP_DB=WormBase Gene ID /WP=CE04419 /TR=Q19587 /GB=AAA83506.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068192 NCBI Caenorhabditis elegans F19C7.5 (F19C7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000030508 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4594649:4598975:1 11/11 None
F19C7.5 ENSEMBL cdna:known chromosome:CEL140:IV:4595949:4596669:1 gene:F19C7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030495 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4595954-4596675(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19C7.5
Entrez Gene 184681 Entrez gene
SwissProt Q19587 EMBL-EBI
WormBase CE04419 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83507 Hypothetical protein F19C7.3 [Caenorhabditis elegans] ref|NP_500594.1| F19C7.3 [Caenorhabditis elegans] 1.0E-179
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 1.0E-114
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 6.0E-99
blast AAA83506 Hypothetical protein F19C7.5 [Caenorhabditis elegans] ref|NP_500593.1| F19C7.5 [Caenorhabditis elegans] 4.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-7
Pfam IPR008758 EMBL-EBI Peptidase S28 2.1E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500593.1 3 13-35,48-66,76-98
F19C7.5 3 13-35,48-66,76-98
GENEFINDER00000030508 3 77-99,114-136,149-168
Sequence
Target Sequence 
>C. ELEGANS:182004_AT
tataccaccttatttcttcatttttagctgtgactgttcttttcacaactgttttccctt
ttgattttaaaccaaatataactttttcaaaatacgagaatatatttttgattatattat
gggttgtcatttttctgcttcacttcctaccttcttattattcgaagtggtttccagcca
actacgttatttcgccagtcgtcagcttctcttcaaacatttgttgtattcgattatgca
cgattttagctaattggcgatataagaaatcggcgggtggaaatgtgccatctaaaatgg
accgcaatgttaatccaattcaacaagttgctactgataacggaaatggtgccatcgctg
tggaccaaacttcgaacgttgctacggatagcgataatgttaccgtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACCACCTTATTTCTTCATTTTT 497 661 56 Antisense
ATTTTTAGCTGTGACTGTTCTTTTC 103 15 75 Antisense
TGTTCTTTTCACAACTGTTTTCCCT 486 561 90 Antisense
TATGGGTTGTCATTTTTCTGCTTCA 91 657 173 Antisense
CTTCCTACCTTCTTATTATTCGAAG 641 217 198 Antisense
CGAAGTGGTTTCCAGCCAACTACGT 601 251 218 Antisense
CTACGTTATTTCGCCAGTCGTCAGC 601 223 237 Antisense
TCGGCGGGTGGAAATGTGCCATCTA 133 603 325 Antisense
GAAATGGTGCCATCGCTGTGGACCA 494 361 398 Antisense
GGACCAAACTTCGAACGTTGCTACG 507 517 417 Antisense
GGATAGCGATAATGTTACCGTCAAT 676 487 441 Antisense
Sequence Source Affymetrix Proprietary Database