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[182003_at]

Description C42D8.1 /REP_DB=WormBase Gene ID /WP=CE27844 /TR=Q18582 /GB=AAA98721.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 82      6grp_total > 55      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1271
1 2 3 4 range
A 408.7
(-3)
P 		445.9
(-2.8)
P 		447.9
(-2.8)
P 		1350.5
(3)
P 		942
B 396.8
(-2.7)
P 		332.1
(-3)
P 		495.2
(-2.2)
P 		1566.5
(3)
P 		1234
C 460.2
(-2.6)
P 		382.7
(-3)
P 		472.4
(-2.6)
P 		1603.3
(3)
P 		1221
avr 421.9
(-2.8) 		386.9
(-3) 		471.8
(-2.5) 		1506.8
(3) 		1120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 396
(2.6)
P 		381.3
(1.7)
P 		378.7
(1.6)
P 		350.3
(-0.1)
P 		300
(-3)
P 		403.5
(3)
P 		104
B 396.5
(0.7)
P 		442.6
(2.1)
P 		436.5
(1.9)
P 		360.1
(-0.3)
P 		266.2
(-3)
P 		475.1
(3)
P 		209
C 273.5
(-3)
P 		338.4
(-1.3)
P 		406.7
(0.5)
P 		421
(0.8)
P 		345.5
(-1.1)
P 		504.9
(3)
P 		231
avr 355.3
(-1) 		387.4
(0.2) 		407.3
(0.9) 		377.1
(-0.2) 		303.9
(-3) 		461.2
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 148.8
(0.1)
P 		96.8
(-3)
P 		117.1
(-1.8)
P 		197.7
(3)
P 		101
B 126.5
(-1.9)
P 		82
(-3)
P 		114.8
(-2.2)
P 		333.8
(3)
P 		252
C 152.3
(-1.4)
P 		110
(-3)
P 		164.6
(-1)
P 		270.3
(3)
P 		160
avr 142.5
(-1.4) 		96.3
(-3) 		132.2
(-1.7) 		267.3
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 73
(-3)
P 		135.6
(3)
P 		82.5
(-2.1)
P 		88.8
(-1.5)
P 		90.5
(-1.3)
P 		98.2
(-0.6)
P 		63
B 138
(0.1)
P 		147.3
(0.8)
P 		106
(-2.2)
P 		95.4
(-3)
P 		108.2
(-2.1)
P 		177.1
(3)
P 		82
C 101.4
(-1.8)
P 		103.3
(-1.7)
P 		103.5
(-1.7)
P 		84.7
(-3)
P 		111.8
(-1.1)
P 		169
(3)
P 		84
avr 104.1
(-1.5) 		128.7
(1) 		97.3
(-2.2) 		89.6
(-3) 		103.5
(-1.6) 		148.1
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182003_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16957
Sequence Type Exemplar sequence
Representative Public ID C42D8.1 NCBI
Target Description C42D8.1 /REP_DB=WormBase Gene ID /WP=CE27844 /TR=Q18582 /GB=AAA98721.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076468(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076468 NCBI Caenorhabditis elegans C42D8.1 (C42D8.1) mRNA, complete cds. 10/11 None
SNAP00000033880 ENSEMBL cdna:SNAP chromosome:CEL140:X:5109477:5112297:1 10/11 None
GENEFINDER00000033888 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5109477:5112297:1 10/11 None
C42D8.1 ENSEMBL cdna:known chromosome:CEL140:X:5107969:5112343:1 gene:C42D8.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5107969-5111331(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C42D8.1
Entrez Gene 180782 Entrez gene
SwissProt Q18582 EMBL-EBI
WormBase CE27844 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508869 C42D8.1 [Caenorhabditis elegans] gb|AAA98721.2| Hypothetical protein C42D8.1 [Caenorhabditis elegans] 1.0E-145
blast NP_508869 C42D8.1 [Caenorhabditis elegans] gb|AAA98721.2| Hypothetical protein C42D8.1 [Caenorhabditis elegans] 1.0E-135
blast CAE68695 Hypothetical protein CBG14610 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508869.1 4 96-118,125-147,162-184,205-224
C42D8.1 4 96-118,125-147,162-184,205-224
SNAP00000033880 4 70-92,107-129,146-168,183-205
GENEFINDER00000033888 4 70-92,107-129,146-168,183-205
Sequence
Target Sequence 
>C. ELEGANS:182003_AT
gattacttgagccagcctgtctatcaacaaactgtctatcgagaaggcccaattttgaaa
ccagatgtagaggtttcagtggtagacgttgaacccgtcgagtgtactcctcacatgtgg
ggtcatccgatgggacttttgaggtggttccaattgctcatgttttttgtgcttcaatgg
ctggtgcagatcacttgcggaggggatgcatgcaccatgattatgaatgtttttggatat
actgccatggggcagctctttgtgctggtaatattccttggactatctatgttttgtggt
gtcatcatccttcttttcgctcttaacgctcatcgttgcattccatccatcatcatcgca
ctggagaaggtatatgcgatccttggaattgtgttcatgtttatcgctggaatcttggga
acctggatggcagttttggcaaacgacagggaagtaaactatcagggaagaggacgaggt
cacattcaaggacaatggattgctgccgcggtactcgagttcctgatggtcattgtctac
atctttgatttcatcctgcagcgccgtgaagtatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTACTTGAGCCAGCCTGTCTATC 430 429 127 Antisense
GTACTCCTCACATGTGGGGTCATCC 504 459 230 Antisense
GTGGTTCCAATTGCTCATGTTTTTT 476 489 270 Antisense
ATGGCTGGTGCAGATCACTTGCGGA 581 53 303 Antisense
TGCCATGGGGCAGCTCTTTGTGCTG 668 585 369 Antisense
TTCGCTCTTAACGCTCATCGTTGCA 220 697 442 Antisense
TTCCATCCATCATCATCGCACTGGA 163 701 467 Antisense
ATCGCTGGAATCTTGGGAACCTGGA 535 33 529 Antisense
GGTACTCGAGTTCCTGATGGTCATT 63 505 636 Antisense
GTCTACATCTTTGATTTCATCCTGC 624 469 661 Antisense
CATCCTGCAGCGCCGTGAAGTATGG 266 211 678 Antisense
Sequence Source Affymetrix Proprietary Database