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[182002_at]

Description Y47H9B.2 /REP_DB=WormBase Gene ID /WP=CE19182 /TR=Q9XWZ8 /GB=CAA21047.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 15.9
(-1.4)
A 		8.2
(-3)
A 		38
(3)
A 		16.4
(-1.3)
A 		30
B 16.1
(3)
A 		9.7
(-2.6)
A 		9.2
(-3)
A 		10.5
(-1.9)
A 		7
C 13.5
(-3)
A 		61.1
(3)
A 		14.1
(-2.9)
A 		34.8
(-0.3)
A 		48
avr 15.2
(-3) 		26.3
(3) 		20.4
(-0.2) 		20.6
(-0.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 15.9
(-1)
A 		10.5
(-3)
A 		12.4
(-2.3)
A 		26.4
(3)
A 		13.9
(-1.7)
A 		11
(-2.8)
A 		16
B 7.4
(-2.8)
A 		8.8
(-2.7)
A 		5.8
(-3)
A 		21.4
(-1.3)
A 		12.9
(-2.2)
A 		59.9
(3)
A 		54
C 10.6
(-2.3)
A 		12.3
(-1.9)
A 		9.6
(-2.5)
A 		32.5
(2.6)
A 		34.3
(3)
A 		7.5
(-3)
A 		27
avr 11.3
(-2.3) 		10.5
(-2.6) 		9.3
(-3) 		26.8
(3) 		20.4
(0.8) 		26.1
(2.8) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.8
(-0)
A 		1.8
(-3)
A 		9.9
(3)
A 		2.4
(-2.6)
A 		8
B 5.1
(3)
A 		2.4
(-2.4)
A 		2.1
(-3)
A 		2.2
(-2.8)
A 		3
C 4.5
(-3)
A 		17.6
(3)
A 		4.9
(-2.8)
A 		5.9
(-2.4)
A 		13
avr 5.1
(-0.5) 		7.3
(3) 		5.6
(0.3) 		3.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.9
(-2.7)
A 		3.8
(-1.4)
A 		2.7
(-3)
A 		6.7
(3)
A 		4.2
(-0.8)
A 		2.7
(-3)
A 		4
B 2.6
(-2.7)
A 		2.9
(-2.6)
A 		1.4
(-3)
A 		5.7
(-1.8)
A 		5.2
(-1.9)
A 		22.3
(3)
A 		21
C 3.9
(-2)
A 		3.7
(-2.1)
A 		2.4
(-3)
A 		6.5
(-0.2)
A 		11.1
(3)
A 		2.5
(-2.9)
A 		9
avr 3.1
(-2.2) 		3.5
(-1.9) 		2.2
(-3) 		6.3
(0.5) 		6.8
(0.9) 		9.2
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.948
Sequence Type Exemplar sequence
Representative Public ID Y47H9B.2 NCBI
Target Description Y47H9B.2 /REP_DB=WormBase Gene ID /WP=CE19182 /TR=Q9XWZ8 /GB=CAA21047.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060592(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060592 NCBI Caenorhabditis elegans Y47H9B.2 (Y47H9B.2) mRNA, complete cds. 9/11 None
SNAP00000043416 ENSEMBL cdna:SNAP chromosome:CEL140:I:11752294:11754591:1 9/11 None
GENEFINDER00000043421 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11752294:11753773:1 11/11 None
Y47H9B.2 ENSEMBL cdna:known chromosome:CEL140:I:11752294:11755536:1 gene:Y47H9B.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11752224-11753704(+) 99.15 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9B.2
Entrez Gene 173057 Entrez gene
SwissProt Q9XWZ8 EMBL-EBI
WormBase CE34123 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21047 Hypothetical protein Y47H9B.2 [Caenorhabditis elegans] ref|NP_492993.2| Y47H9B.2 [Caenorhabditis elegans] 1.0E-152
blast CAA21047 Hypothetical protein Y47H9B.2 [Caenorhabditis elegans] ref|NP_492993.2| Y47H9B.2 [Caenorhabditis elegans] 1.0E-130
blast CAE67998 Hypothetical protein CBG13608 [Caenorhabditis briggsae] 1.0E-19
blast CAB04288 Hypothetical protein F35E2.9 [Caenorhabditis elegans] ref|NP_492987.2| F35E2.9 [Caenorhabditis elegans] 2.0E-18
blast CAB04288 Hypothetical protein F35E2.9 [Caenorhabditis elegans] ref|NP_492987.2| F35E2.9 [Caenorhabditis elegans] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 3.6E-88
Sequence
Target Sequence 
>C. ELEGANS:182002_AT
taatatctcctcgacacttgatcacttcttcacggcttttcctcacaaaatcagcttgga
aaaatagcggagattcgattgattgtgatgacagcataaagcacttggaagttccggtaa
acaagctctcggatgtgattgagccgtgcctttctcaaaaggagaattgctccccgaaag
tgatgaattttgccagagcatatattctgaacttttgcaaatcaacattggtgcaaaaaa
gagtgtactccttcccaatgattttggagcttgatgagaatttggaaggcaactcaagtt
atccatgtctagctgatgaatcaatcaaacttgccaaaggagatgccattgacgcttatg
gatgtacaaacaattcggaatggaagcatcgaaaagtgaatgtcggcgccggtgttagtc
cggatattctatacggaactgttccaaataccgaaaagggattcgatctgggacctctca
caaaaaatgattccggcagagtttggatggttggattcgatttagcaggtgagcaaatgt
ctgcatgccaacgagactgtttacattatgcctgcctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATATCTCCTCGACACTTGATCAC 393 635 215 Antisense
ACGGCTTTTCCTCACAAAATCAGCT 222 95 246 Antisense
GGAAGTTCCGGTAAACAAGCTCTCG 694 529 321 Antisense
CGGATGTGATTGAGCCGTGCCTTTC 321 243 344 Antisense
GAATTGCTCCCCGAAAGTGATGAAT 94 323 378 Antisense
AAAGAGTGTACTCCTTCCCAATGAT 101 123 452 Antisense
GCAACTCAAGTTATCCATGTCTAGC 498 319 503 Antisense
GAAAAGTGAATGTCGGCGCCGGTGT 169 353 605 Antisense
TTCGATCTGGGACCTCTCACAAAAA 611 695 676 Antisense
GGTGAGCAAATGTCTGCATGCCAAC 492 499 742 Antisense
GACTGTTTACATTATGCCTGCCTAC 176 375 769 Antisense
Sequence Source Affymetrix Proprietary Database