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[182001_at]

Description Y51B9A.5 /REP_DB=WormBase Gene ID /WP=CE19215 /TR=Q9XXC2 /GB=CAA19540.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 44      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.6
(0)
A 		15.6
(3)
A 		1.4
(-3)
A 		3.3
(-2.2)
A 		14
B 5.6
(3)
A 		2.9
(-2.1)
A 		4.4
(0.8)
A 		2.4
(-3)
A 		3
C 10.6
(3)
A 		5.9
(-0.5)
A 		2.5
(-3)
A 		2.8
(-2.8)
A 		8
avr 8.3
(3) 		8.1
(2.8) 		2.8
(-3) 		2.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 3.3
(-2.9)
A 		2.5
(-3)
A 		2
(-3)
A 		4.3
(-2.8)
A 		69.1
(2.3)
A 		77.3
(3)
P 		75
B 1.9
(-2.9)
A 		2.5
(-2.9)
A 		21.3
(-1)
A 		1.2
(-3)
A 		12.6
(-1.9)
A 		62.2
(3)
P 		61
C 6.4
(-2.7)
A 		28.2
(-0.2)
A 		4
(-3)
A 		7.2
(-2.6)
A 		55.5
(3)
A 		28.9
(-0.1)
M 		52
avr 3.9
(-3) 		11.1
(-2.2) 		9.1
(-2.4) 		4.2
(-3) 		45.7
(1.8) 		56.1
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.1
(2.4)
A 		3.4
(3)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		3
B 1.8
(3)
A 		0.7
(-2.1)
A 		1
(-0.7)
A 		0.5
(-3)
A 		1
C 3.5
(3)
A 		1.7
(-0.6)
A 		0.9
(-2.2)
A 		0.5
(-3)
A 		3
avr 2.8
(3) 		1.9
(0.7) 		0.8
(-2.2) 		0.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		0.9
(-2.9)
A 		0.4
(-3)
A 		1.1
(-2.8)
A 		20.9
(3)
A 		18.8
(2.4)
P 		21
B 0.7
(-2.9)
A 		0.8
(-2.9)
A 		5.2
(-1.7)
A 		0.3
(-3)
A 		5.1
(-1.7)
A 		23.2
(3)
P 		23
C 2.4
(-2.5)
A 		8.6
(-0.3)
A 		1
(-3)
A 		1.4
(-2.9)
A 		17.9
(3)
A 		9.7
(0.1)
M 		17
avr 1.2
(-2.9) 		3.4
(-2.1) 		2.2
(-2.5) 		0.9
(-3) 		14.6
(2) 		17.2
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2940
Sequence Type Exemplar sequence
Representative Public ID Y51B9A.5 NCBI
Target Description Y51B9A.5 /REP_DB=WormBase Gene ID /WP=CE19215 /TR=Q9XXC2 /GB=CAA19540.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063605(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063605 NCBI Caenorhabditis elegans Y51B9A.5 (Y51B9A.5) mRNA, complete cds. 11/11 None
SNAP00000039075 ENSEMBL cdna:SNAP chromosome:CEL140:II:9404124:9404603:1 11/11 None
GENEFINDER00000039079 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9404124:9404603:1 11/11 None
Y51B9A.5 ENSEMBL cdna:known chromosome:CEL140:II:9404124:9404603:1 gene:Y51B9A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9404120-9404600(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51B9A.5
Entrez Gene 190138 Entrez gene
SwissProt Q9XXC2 EMBL-EBI
WormBase CE19215 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19540 Hypothetical protein Y51B9A.5 [Caenorhabditis elegans] ref|NP_496006.1| Y51B9A.5 [Caenorhabditis elegans] 7.0E-44
blast CAE57956 Hypothetical protein CBG01015 [Caenorhabditis briggsae] 9.0E-12
blast CAB03063 Hypothetical protein F36A2.12 [Caenorhabditis elegans] ref|NP_492388.2| F36A2.12 [Caenorhabditis elegans] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182001_AT
acaagtcaccaatgaaagggagcgaagcagaaaatgccaaagatcagttgaagaagaaaa
ctgctgaagaattcgctcaaatggctatcatcaatcgtgctttttctgctgagtcaactg
aagacccaccaccactggctcagaaacggtccgaatcgactttaaaaccattgaatgatg
aattgaagtcggtgccactggttagagctttcaattctgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGTCACCAATGAAAGGGAGCGA 255 109 20 Antisense
GAAAACTGCTGAAGAATTCGCTCAA 200 355 75 Antisense
AGAATTCGCTCAAATGGCTATCATC 633 75 87 Antisense
GGCTATCATCAATCGTGCTTTTTCT 358 537 102 Antisense
GTGCTTTTTCTGCTGAGTCAACTGA 695 479 116 Antisense
CTGAGTCAACTGAAGACCCACCACC 704 235 128 Antisense
CACTGGCTCAGAAACGGTCCGAATC 272 197 152 Antisense
GTCCGAATCGACTTTAAAACCATTG 442 475 168 Antisense
GATGAATTGAAGTCGGTGCCACTGG 50 413 196 Antisense
GTCGGTGCCACTGGTTAGAGCTTTC 97 473 207 Antisense
TGGTTAGAGCTTTCAATTCTGCTGA 228 551 218 Antisense
Sequence Source Affymetrix Proprietary Database