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[181999_s_at]

Description ZC155.7 /REP_DB=WormBase Gene ID /WP=CE28155 /TR=Q9TY08 /GB=AAD31934.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 74      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 64      6grp_total > 75      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 619.1
(0.2)
P 		594.3
(-0.7)
P 		530.6
(-3)
P 		694.5
(3)
P 		164
B 729.4
(3)
P 		639.8
(0.7)
P 		499
(-3)
P 		636
(0.6)
P 		230
C 682.4
(3)
P 		635.3
(-0.1)
P 		592.3
(-3)
P 		625
(-0.8)
P 		90
avr 677
(3) 		623.1
(0.6) 		540.6
(-3) 		651.8
(1.9) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 749.5
(-2.4)
P 		716.7
(-3)
P 		896.4
(0.3)
P 		1041.1
(3)
P 		871.7
(-0.1)
P 		1003.1
(2.3)
P 		324
B 698.9
(-3)
P 		750.7
(-1.9)
P 		966.4
(2.5)
P 		913.8
(1.4)
P 		785.5
(-1.2)
P 		991.5
(3)
P 		293
C 525.8
(-3)
P 		875.4
(0.7)
P 		885.8
(0.9)
P 		1086.8
(3)
P 		602.6
(-2.2)
P 		1013.4
(2.2)
P 		561
avr 658.1
(-3) 		780.9
(-0.9) 		916.2
(1.4) 		1013.9
(3) 		753.3
(-1.4) 		1002.7
(2.8) 		356
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 225.4
(3)
P 		129
(-1.7)
P 		138.7
(-1.2)
P 		101.7
(-3)
P 		124
B 232.6
(3)
P 		158
(-0.8)
P 		115.6
(-3)
P 		135.5
(-2)
P 		117
C 225.9
(3)
P 		182.6
(0.8)
P 		206.4
(2)
P 		105.4
(-3)
P 		121
avr 228
(3) 		156.5
(-0.8) 		153.6
(-0.9) 		114.2
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 138.2
(-3)
P 		254.9
(2.6)
P 		195.2
(-0.3)
P 		264
(3)
P 		263
(3)
P 		244.2
(2.1)
P 		126
B 243.2
(-2.6)
P 		249.9
(-2.3)
P 		234.7
(-3)
P 		242
(-2.7)
P 		319.2
(0.8)
P 		369.7
(3)
P 		135
C 194.9
(-3)
P 		267.1
(0)
P 		225.5
(-1.7)
P 		218.6
(-2)
P 		195
(-3)
P 		339.2
(3)
P 		144
avr 192.1
(-3) 		257.3
(0.1) 		218.5
(-1.7) 		241.5
(-0.6) 		259.1
(0.2) 		317.7
(3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181999_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6980
Sequence Type Exemplar sequence
Representative Public ID ZC155.7 NCBI
Target Description ZC155.7 /REP_DB=WormBase Gene ID /WP=CE28155 /TR=Q9TY08 /GB=AAD31934.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065704 NCBI Caenorhabditis elegans ZC155.7 (ZC155.7) mRNA, complete cds. 11/11 None
SNAP00000027523 ENSEMBL cdna:SNAP chromosome:CEL140:III:5207580:5208840:-1 11/11 None
GENEFINDER00000027532 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5207580:5208840:-1 11/11 None
ZC155.7 ENSEMBL cdna:known chromosome:CEL140:III:5207580:5209160:-1 gene:ZC155.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5207578-5209189(-) 88.83 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC155.7
Entrez Gene 175712 Entrez gene
SwissProt Q9TY08 EMBL-EBI
WormBase CE28155 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17535_S_AT syntaxin 42 (SYP42) / TLG2b at
ATH1-121501:255512_AT syntaxin 42 (SYP42) / TLG2b at
CANINE:1596359_AT similar to syntaxin 16 isoform a cfa
CANINE:1586417_AT similar to syntaxin 16 isoform a cfa
CANINE_2:CFA.10280.1.S1_AT similar to syntaxin 16 isoform a cfa
CANINE_2:CFA.10962.1.A1_AT similar to syntaxin 16 isoform a cfa
CANINE_2:CFA.17383.1.S1_AT similar to syntaxin 16 isoform a cfa
CANINE_2:CFA.21018.1.S1_AT similar to syntaxin 16 isoform a cfa
CANINE_2:CFAAFFX.18848.1.S1_S_AT similar to syntaxin 16 isoform a cfa
DROSOPHILA_2:1635421_AT Syntaxin 16 dm
DROSGENOME1:152288_AT Syntaxin 16 dm
CHICKEN:GGAAFFX.12300.1.S1_S_AT syntaxin 16 gga
HG-U133_PLUS_2:221638_S_AT syntaxin 16 hs
HG-U133A:221638_S_AT syntaxin 16 hs
HG-U133A_2:221638_S_AT syntaxin 16 hs
HG-U95AV2:39523_AT syntaxin 16 hs
HU35KSUBA:AA203630_AT syntaxin 16 hs
HU35KSUBD:RC_N24133_AT syntaxin 16 hs
HUGENEFL:AF008937_AT syntaxin 16 hs
U133_X3P:G2352817_3P_S_AT syntaxin 16 hs
U133_X3P:G2352817_3P_A_AT syntaxin 16 hs
U133_X3P:HS2.412288.1.S1_3P_S_AT syntaxin 16 hs
U133_X3P:HS.102178.1.A3_3P_A_AT syntaxin 16 hs
U133_X3P:HS.102178.1.A2_3P_A_AT syntaxin 16 hs
HG-U133_PLUS_2:1558249_S_AT syntaxin 16 hs
HG-U133A_2:221499_S_AT syntaxin 16 hs
HG-FOCUS:221499_S_AT syntaxin 16 hs
HG-U133_PLUS_2:221499_S_AT syntaxin 16 hs
HG-U133A:221499_S_AT syntaxin 16 hs
HG-U133A_2:221500_S_AT syntaxin 16 hs
HG-U133_PLUS_2:221500_S_AT syntaxin 16 hs
HG-U133A:221500_S_AT syntaxin 16 hs
HG-U95AV2:40885_S_AT syntaxin 16 hs
HG-U95C:65432_AT syntaxin 16 hs
HU35KSUBC:RC_AA489328_AT Syntaxin 16 hs
HG-U95AV2:40883_AT Syntaxin 16 hs
HG-U95AV2:40884_G_AT Syntaxin 16 hs
HG-U95AV2:41121_AT Syntaxin 16 hs
HG-U95C:60702_AT Syntaxin 16 hs
HU35KSUBA:AA203345_AT Syntaxin 16 hs
HU35KSUBA:W28230_AT Syntaxin 16 hs
MG-U74BV2:112829_AT syntaxin 16 mm
MG-U74BV2:107766_AT syntaxin 16 mm
MG-U74CV2:168730_F_AT syntaxin 16 mm
MOE430B:1429237_AT syntaxin 16 mm
MOUSE430_2:1429237_AT syntaxin 16 mm
MG-U74CV2:133708_AT Syntaxin 16 (Stx16), mRNA mm
MU19KSUBC:TC35213_AT Syntaxin 16 (Stx16), mRNA mm
RAE230A:1367530_AT Syntaxin 16 (predicted) rn
RAE230B:1367530_AT Syntaxin 16 (predicted) rn
RAT230_2:1367530_AT Syntaxin 16 (predicted) rn
RG-U34C:RC_AI145853_AT Syntaxin 16 (predicted) rn
YEAST_2:1772321_AT Syntaxin-like t-SNARE that forms a complex with Tlg1p and Vti1p and mediates fusion of endosome-derived vesicles with the late Golgi; binds Vps45p, which prevents Tlg2p degradation and also facilitates t-SNARE complex formation Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD31934 Hypothetical protein ZC155.7 [Caenorhabditis elegans] ref|NP_498105.1| ZC155.7 [Caenorhabditis elegans] 1.0E-156
blast H88451 protein ZC155.3 [imported] - Caenorhabditis elegans 1.0E-154
blast CAE60037 Hypothetical protein CBG03546 [Caenorhabditis briggsae] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR006011 EMBL-EBI Syntaxin, N-terminal 1.0E-17
Pfam IPR000727 EMBL-EBI Target SNARE coiled-coil domain 1.1E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498105.1 1 309-326
ZC155.7 1 309-326
SNAP00000027523 1 309-326
GENEFINDER00000027532 1 309-326
Sequence
Target Sequence 
>C. ELEGANS:181999_S_AT
gagaaaatgctgctgcaaccctgagcctaacacttagccaaattaccgatgaatttagag
gaagacaactgaaatatttgagtgatatccagaatcgttcccgtaacgtggacaattacc
ttatcacaacagatccactgattgatgctcccaattgggctgagctagatgtgtcaccat
ctacagaaatatcaatggcccagcttcaacaatttatgaataacgatcgagaagttcgag
agcgcgaaaaggaagtgatggctgtgaacacatcaattagagaattaaatacactcttcc
aggatttatcagaaatgattgtagatcaaggaagcgtcattgatagaatagactataatg
ttgaacagacctcgattcgtgtgtcgaaagcagttgaagatgtcttcaaagcggaacgat
atcaaaaaggaaacaaaaaaatgcattgtatttgtatgctcactgttgccattatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAAATGCTGCTGCAACCCTGAG 149 391 638 Antisense
TGCAACCCTGAGCCTAACACTTAGC 653 575 651 Antisense
GAGTGATATCCAGAATCGTTCCCGT 435 401 717 Antisense
GAATCGTTCCCGTAACGTGGACAAT 284 327 729 Antisense
ATTACCTTATCACAACAGATCCACT 357 13 752 Antisense
AGATCCACTGATTGATGCTCCCAAT 293 67 768 Antisense
TGGGCTGAGCTAGATGTGTCACCAT 247 555 793 Antisense
TCAATGGCCCAGCTTCAACAATTTA 246 633 829 Antisense
AATACACTCTTCCAGGATTTATCAG 605 171 925 Antisense
TGAACAGACCTCGATTCGTGTGTCG 504 573 999 Antisense
GTATGCTCACTGTTGCCATTATTTT 189 455 1091 Antisense
Sequence Source Affymetrix Proprietary Database