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[181998_at]

Description F26B1.4 /REP_DB=WormBase Gene ID /WP=CE09676 /TR=P91274 /GB=AAB37788.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 49      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 21.1
(-2.9)
A 		394.8
(2.9)
P 		398.8
(3)
P 		15
(-3)
A 		384
B 4.1
(-3)
A 		281.6
(3)
P 		249.3
(2.3)
P 		3.1
(-3)
A 		279
C 2.9
(-3)
A 		370.6
(3)
P 		312.5
(2.1)
P 		86.3
(-1.6)
A 		368
avr 9.4
(-3) 		349
(3) 		320.2
(2.5) 		34.8
(-2.6) 		340

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 94.9
(-2.6)
A 		336.5
(3)
P 		215.9
(0.2)
P 		210.6
(0.1)
P 		121.5
(-2)
A 		79.3
(-3)
P 		257
B 51
(-3)
A 		261.3
(3)
P 		173.4
(0.5)
P 		136.8
(-0.6)
P 		123.1
(-0.9)
P 		136
(-0.6)
P 		210
C 64.2
(-3)
A 		255.4
(3)
P 		189.8
(0.9)
P 		170.4
(0.3)
P 		150.8
(-0.3)
P 		111.1
(-1.5)
P 		191
avr 70
(-3) 		284.4
(3) 		193
(0.4) 		172.6
(-0.1) 		131.8
(-1.3) 		108.8
(-1.9) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 7.7
(-2.7)
A 		85.7
(1.9)
P 		104.3
(3)
P 		2.2
(-3)
A 		102
B 1.3
(-2.9)
A 		69.6
(3)
P 		57.8
(2)
P 		0.7
(-3)
A 		69
C 1
(-3)
A 		106.6
(2.9)
P 		108.9
(3)
P 		14.6
(-2.2)
A 		108
avr 3.3
(-3) 		87.3
(2.8) 		90.3
(3) 		5.8
(-2.8) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 17.5
(-3)
A 		119.7
(3)
P 		47
(-1.3)
P 		53.4
(-0.9)
P 		36.7
(-1.9)
A 		19.3
(-2.9)
P 		102
B 17.8
(-3)
A 		87
(3)
P 		42.1
(-0.9)
P 		36.2
(-1.4)
P 		50
(-0.2)
P 		50.7
(-0.1)
P 		69
C 23.8
(-3)
A 		77.9
(3)
P 		48.3
(-0.3)
P 		34.3
(-1.8)
P 		48.8
(-0.2)
P 		37.2
(-1.5)
P 		54
avr 19.7
(-3) 		94.9
(3) 		45.8
(-0.9) 		41.3
(-1.3) 		45.2
(-1) 		35.7
(-1.7) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.917
Sequence Type Exemplar sequence
Representative Public ID F26B1.4 NCBI
Target Description F26B1.4 /REP_DB=WormBase Gene ID /WP=CE09676 /TR=P91274 /GB=AAB37788.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059421(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059421 NCBI Caenorhabditis elegans COLlagen family member (col-58) (col-58) mRNA, complete cds. 11/11 None
GENEFINDER00000041723 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6317249:6322727:1 10/11 None
SNAP00000041713 ENSEMBL cdna:SNAP chromosome:CEL140:I:6319413:6320473:1 10/11 None
F26B1.4 ENSEMBL cdna:known chromosome:CEL140:I:6319413:6320473:1 gene:F26B1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6319341-6320402(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol col-58
Ensembl F26B1.4
Entrez Gene 184957 Entrez gene
SwissProt P91274 EMBL-EBI
WormBase CE09676 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6817 phosphate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
42302 structural constituent of cuticle inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491821 F26B1.5a [Caenorhabditis elegans] gb|AAB37787.2| Hypothetical protein F26B1.5a [Caenorhabditis elegans] 0.0
blast CAA94346 Hypothetical protein F49E11.7 [Caenorhabditis elegans] ref|NP_502500.1| F49E11.7 [Caenorhabditis elegans] 1.0E-126
blast AAB92072 Hypothetical protein F42G8.8 [Caenorhabditis elegans] ref|NP_501356.1| F42G8.8 [Caenorhabditis elegans] 1.0E-121
blast NP_491822 COLlagen family member (col-58) [Caenorhabditis elegans] gb|AAB37788.1| Collagen protein 58 [Caenorhabditis elegans] 4.0E-84
blast NP_491822 COLlagen family member (col-58) [Caenorhabditis elegans] gb|AAB37788.1| Collagen protein 58 [Caenorhabditis elegans] 6.0E-69
blast CAE67161 Hypothetical protein CBG12587 [Caenorhabditis briggsae] 3.0E-62
blast CAE67161 Hypothetical protein CBG12587 [Caenorhabditis briggsae] 7.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 1.5E-13
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 6.2E-9
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 5.1E-37
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 3.6E-19
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 9.1E-50
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 1.5E-13
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 6.2E-9
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 1.5E-13
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 6.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491822.1 1 10-32
F26B1.4 1 10-32
GENEFINDER00000041723 5 749-768,796-815,841-863,875-897,910-932
SNAP00000041713 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:181998_AT
agaggatgcaattgccgtggaccaccaggaccacccggatttaatggggaagatggatgt
aatcgtttttattgtaatttatctcataatttaccccaacttccagatgatggtgaacct
ggagttccgggatcatcaggaggtgatgacatatcagtgcttcgtcacgatccgggacga
tgtgctcaatgcccagctggaccaatgggaccaccaggaccacgtggaccacctggagta
ccaggaattactggagcaccaggtctcgacggaatcccaggaagacacggaacgccagga
tatccaggagaaccaggacttccaggaccggttggagatcctggttttgatggaaaacct
ggaaacccgggaaataatggagtacgtgttcgtagaattcccgggccaccaggacctcga
ggagccgaaggagatagtggagtacagggaggacctggttctccaggattggcaggagct
ccaggagattcaggagcacctggaccacaagggcctccaggacaaaagggaatggatggt
acacctggtggattcgggcaaccaggacctcaaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGGATGCAATTGCCGTGGACCAC 416 67 304 Antisense
TAATTTACCCCAACTTCCAGATGAT 428 635 390 Antisense
GAACCTGGAGTTCCGGGATCATCAG 305 345 418 Antisense
CATATCAGTGCTTCGTCACGATCCG 87 215 453 Antisense
TCACGATCCGGGACGATGTGCTCAA 64 627 468 Antisense
CAGGTCTCGACGGAATCCCAGGAAG 153 207 563 Antisense
GACACGGAACGCCAGGATATCCAGG 567 367 587 Antisense
GGACCGGTTGGAGATCCTGGTTTTG 142 521 628 Antisense
GTACAGGGAGGACCTGGTTCTCCAG 164 459 745 Antisense
GGTACACCTGGTGGATTCGGGCAAC 538 503 841 Antisense
ATTCGGGCAACCAGGACCTCAAGGT 467 3 855 Antisense
Sequence Source Affymetrix Proprietary Database