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[181997_at]

Description F36H5.9 /REP_DB=WormBase Gene ID /WP=CE09966 /TR=P91295 /GB=AAK31518.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 13.7
(0.6)
A 		21.6
(3)
A 		17.2
(1.7)
A 		1.7
(-3)
A 		20
B 22.5
(2.5)
A 		9.7
(-3)
A 		9.6
(-3)
A 		23.7
(3)
A 		14
C 6.2
(-1.7)
A 		1.4
(-3)
A 		3.2
(-2.5)
A 		24
(3)
A 		23
avr 14.1
(0.8) 		10.9
(-2.2) 		10
(-3) 		16.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 21.4
(0.5)
A 		6.6
(-2.2)
A 		20
(0.3)
A 		2
(-3)
A 		14
(-0.8)
A 		34.9
(3)
A 		33
B 2.6
(-3)
A 		8.6
(-1.3)
A 		24
(3)
A 		22.1
(2.5)
A 		12.6
(-0.2)
A 		20.8
(2.1)
A 		21
C 7.3
(-0.7)
A 		4.5
(-1.7)
A 		9.2
(0)
A 		17.4
(3)
A 		1
(-3)
A 		16.8
(2.8)
A 		16
avr 10.4
(-1.7) 		6.6
(-3) 		17.7
(0.8) 		13.8
(-0.5) 		9.2
(-2.1) 		24.2
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5
(3)
A 		4.7
(2.6)
A 		4.5
(2.4)
A 		0.2
(-3)
A 		5
B 7.2
(3)
A 		2.4
(-2.8)
A 		2.2
(-3)
A 		5
(0.4)
A 		5
C 2.1
(-0.2)
A 		0.4
(-3)
A 		1.1
(-1.8)
A 		4
(3)
A 		4
avr 4.8
(3) 		2.5
(-3) 		2.6
(-2.7) 		3.1
(-1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.9
(-0.5)
A 		2.3
(-1.7)
A 		4.4
(-0.1)
A 		0.5
(-3)
A 		4.2
(-0.2)
A 		8.5
(3)
A 		8
B 0.9
(-3)
A 		2.8
(-1.3)
A 		5.8
(1.3)
A 		5.9
(1.4)
A 		5.1
(0.7)
A 		7.7
(3)
A 		7
C 2.7
(-0.3)
A 		1.4
(-1.8)
A 		2.3
(-0.7)
A 		3.5
(0.6)
A 		0.3
(-3)
A 		5.6
(3)
A 		5
avr 2.5
(-2.6) 		2.2
(-3) 		4.2
(-0.6) 		3.3
(-1.7) 		3.2
(-1.8) 		7.3
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181997_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5295
Sequence Type Exemplar sequence
Representative Public ID F36H5.9 NCBI
Target Description F36H5.9 /REP_DB=WormBase Gene ID /WP=CE09966 /TR=P91295 /GB=AAK31518.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061667 NCBI Caenorhabditis elegans F36H5.9 (F36H5.9) mRNA, complete cds. 11/11 None
F36H5.9 ENSEMBL cdna:known chromosome:CEL140:II:1752752:1753093:-1 gene:F36H5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061668 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028550 1/11 Cross Hyb Matching Probes None
F36H5.11 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1752750-1753092(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H5.9
Entrez Gene 185387 Entrez gene
SwissProt P91295 EMBL-EBI
WormBase CE09966 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31518 Hypothetical protein F36H5.9 [Caenorhabditis elegans] ref|NP_494068.1| F36H5.9 [Caenorhabditis elegans] 2.0E-48
blast AAC26314 Hypothetical protein T08E11.6 [Caenorhabditis elegans] ref|NP_494083.1| T08E11.6 [Caenorhabditis elegans] 4.0E-14
blast AAK31519 Hypothetical protein F36H5.8 [Caenorhabditis elegans] ref|NP_494067.1| F36H5.8 [Caenorhabditis elegans] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-6
Sequence
Target Sequence 
>C. ELEGANS:181997_AT
tctgcctagcaatgagctatcgaaagtactacgtcacatggatcctattgcgcaatttgg
actctcattgttgtctgagaactccaaaaagctcatcagcgctcttaaaattttcgatag
aaaaatatatattgaagtacaaaatcatgtacatgtaatactcgatacgcacaattgctc
atttggtttcaattgtggaacaactgatcgtaatgtggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCCTAGCAATGAGCTATCGAAA 94 609 36 Antisense
GAAAGTACTACGTCACATGGATCCT 137 361 57 Antisense
CACATGGATCCTATTGCGCAATTTG 346 195 70 Antisense
CCTATTGCGCAATTTGGACTCTCAT 51 269 79 Antisense
AATTTGGACTCTCATTGTTGTCTGA 19 175 89 Antisense
GTTGTCTGAGAACTCCAAAAAGCTC 416 437 105 Antisense
GCTCATCAGCGCTCTTAAAATTTTC 192 301 126 Antisense
GTACATGTAATACTCGATACGCACA 82 461 184 Antisense
ACTCGATACGCACAATTGCTCATTT 540 99 195 Antisense
TTGCTCATTTGGTTTCAATTGTGGA 511 701 210 Antisense
GTGGAACAACTGATCGTAATGTGGG 331 491 230 Antisense
Sequence Source Affymetrix Proprietary Database