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[181996_at]

Description ZK1053.1 /REP_DB=WormBase Gene ID /WP=CE15515 /TR=O02339 /GB=CAB04978.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 35
(1.6)
A 		35.7
(1.8)
A 		19
(-3)
A 		39.9
(3)
A 		21
B 35.7
(3)
A 		11.8
(-1.5)
A 		3.8
(-3)
A 		19.2
(-0.1)
A 		32
C 8.9
(-2.7)
A 		8
(-3)
A 		23.5
(3)
A 		23.1
(2.8)
A 		16
avr 26.5
(2.6) 		18.5
(-1.5) 		15.4
(-3) 		27.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 5.1
(-2.7)
A 		3.7
(-3)
A 		5.1
(-2.7)
A 		32.9
(2.5)
A 		35.8
(3)
A 		6.2
(-2.5)
A 		32
B 4.1
(-2.6)
A 		22.4
(2.9)
A 		22.9
(3)
A 		3.2
(-2.9)
A 		2.8
(-3)
A 		9.2
(-1.1)
A 		20
C 7
(-2)
A 		36.1
(3)
A 		1.7
(-2.9)
A 		3.9
(-2.5)
A 		1.1
(-3)
A 		1.2
(-3)
A 		35
avr 5.4
(-3) 		20.7
(3) 		9.9
(-1.2) 		13.3
(0.1) 		13.2
(0.1) 		5.5
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.7
(3)
A 		7.7
(-0.9)
A 		5
(-3)
A 		5.8
(-2.4)
A 		8
B 11.4
(3)
A 		2.9
(-1.9)
A 		0.9
(-3)
A 		4.1
(-1.2)
A 		11
C 2.9
(-2.4)
A 		2.3
(-3)
A 		8.2
(3)
A 		3.9
(-1.4)
A 		6
avr 9
(3) 		4.3
(-3) 		4.7
(-2.5) 		4.6
(-2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.3
(-2.8)
A 		1.1
(-2.9)
A 		8.3
(1.5)
A 		10.8
(3)
A 		1.5
(-2.6)
A 		10
B 1.4
(-2.5)
A 		7.5
(3)
A 		5.6
(1.3)
A 		0.9
(-3)
A 		1.1
(-2.8)
A 		3.4
(-0.7)
A 		7
C 2.6
(-1.7)
A 		11
(3)
A 		0.4
(-2.9)
A 		0.8
(-2.7)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		11
avr 1.6
(-3) 		6.6
(3) 		2.4
(-2) 		3.3
(-1) 		4.1
(-0) 		1.8
(-2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1169
Sequence Type Exemplar sequence
Representative Public ID ZK1053.1 NCBI
Target Description ZK1053.1 /REP_DB=WormBase Gene ID /WP=CE15515 /TR=O02339 /GB=CAB04978.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060918 NCBI Caenorhabditis elegans ZK1053.1 (ZK1053.1) mRNA, complete cds. 11/11 None
GENEFINDER00000040810 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13236114:13237820:-1 10/11 None
SNAP00000040796 ENSEMBL cdna:SNAP chromosome:CEL140:I:13236173:13240298:-1 10/11 None
ZK1053.1 ENSEMBL cdna:known chromosome:CEL140:I:13236114:13238466:-1 gene:ZK1053.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13236044-13238397(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1053.1
Entrez Gene 191506 Entrez gene
SwissProt O02339 EMBL-EBI
WormBase CE15515 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04978 Hypothetical protein ZK1053.1 [Caenorhabditis elegans] ref|NP_493319.1| ZK1053.1 [Caenorhabditis elegans] 0.0
blast CAB04978 Hypothetical protein ZK1053.1 [Caenorhabditis elegans] ref|NP_493319.1| ZK1053.1 [Caenorhabditis elegans] 1.0E-178
blast CAB04978 Hypothetical protein ZK1053.1 [Caenorhabditis elegans] ref|NP_493319.1| ZK1053.1 [Caenorhabditis elegans] 1.0E-140
blast CAB05619 Hypothetical protein T15D6.9 [Caenorhabditis elegans] ref|NP_493140.1| T15D6.9 [Caenorhabditis elegans] 1.0E-138
blast CAB05619 Hypothetical protein T15D6.9 [Caenorhabditis elegans] ref|NP_493140.1| T15D6.9 [Caenorhabditis elegans] 1.0E-128
blast CAB05619 Hypothetical protein T15D6.9 [Caenorhabditis elegans] ref|NP_493140.1| T15D6.9 [Caenorhabditis elegans] 1.0E-105
blast CAB04380 Hypothetical protein F41D3.9 [Caenorhabditis elegans] ref|NP_493099.1| F41D3.9 [Caenorhabditis elegans] 1.0E-104
blast CAB04380 Hypothetical protein F41D3.9 [Caenorhabditis elegans] ref|NP_493099.1| F41D3.9 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040810 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:181996_AT
gagtttcgggtattcaacacgtctttatatccggaatttgtgagcaactggtcgacctat
aacttcaaggcaatagtgatggccgaaatgctccaagagttcccggcggtttggtggata
gatgctcatattggagtcattaaaccaaatataattaggaatctatatgcggatatcaga
tccgaaagacttaccactgattatgcaactgttgttggagccactgagactaaccattcc
aattttgcagttttgaattcaagtgagcaatttcaggaaaaaaattcaaaaattattatt
tcagaactcttgaaattctttcccacaagctcgctagagcttctgaaacggcgcactcaa
attcaatccggtatcatctttcttgcacggaccagatataccatgaaactttttaaatgg
tgggtactctgctctctcacagaaaactgcatgaaccctcccggatctcaagtcaagtgc
attttcgagcgaaattggtgcaagtatcaggctaactgttttcgatatgatcagtctgtg
ctcaacctgttactactcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTCGGGTATTCAACACGTCTT 297 395 583 Antisense
GAGCAACTGGTCGACCTATAACTTC 96 391 624 Antisense
TCCAAGAGTTCCCGGCGGTTTGGTG 71 587 674 Antisense
AGCCACTGAGACTAACCATTCCAAT 256 83 801 Antisense
GAACTCTTGAAATTCTTTCCCACAA 518 349 886 Antisense
GCTAGAGCTTCTGAAACGGCGCACT 663 301 915 Antisense
ACGGCGCACTCAAATTCAATCCGGT 197 95 930 Antisense
CAATCCGGTATCATCTTTCTTGCAC 138 183 946 Antisense
GGTACTCTGCTCTCTCACAGAAAAC 643 503 1005 Antisense
CTCCCGGATCTCAAGTCAAGTGCAT 454 233 1040 Antisense
TGTGCTCAACCTGTTACTACTCAAC 496 555 1119 Antisense
Sequence Source Affymetrix Proprietary Database