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[181994_at]

Description C41H7.6 /REP_DB=WormBase Gene ID /WP=CE08677 /TR=O17149 /GB=AAB70937.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 61      6grp_total > 25      4grp_total > 50      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 467
1 2 3 4 range
A 487.4
(-0.8)
P 		691.7
(3)
P 		642.2
(2.1)
P 		367.3
(-3)
P 		324
B 458.4
(-1.4)
P 		681.6
(3)
P 		613.7
(1.7)
P 		375.6
(-3)
P 		306
C 383.4
(-2)
P 		771.1
(3)
P 		484.4
(-0.7)
P 		303.8
(-3)
P 		467
avr 443.1
(-1.5) 		714.8
(3) 		580.1
(0.8) 		348.9
(-3) 		366

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 506
(0.5)
P 		631.5
(3)
P 		346.3
(-2.6)
P 		326.5
(-3)
P 		332.5
(-2.9)
P 		355.7
(-2.4)
P 		305
B 438.5
(0.5)
P 		527.4
(3)
P 		402.4
(-0.5)
P 		336.9
(-2.4)
P 		314.2
(-3)
P 		361.1
(-1.7)
P 		213
C 529.1
(2.8)
P 		535.3
(3)
P 		389.6
(-0.5)
P 		296.6
(-2.8)
P 		289
(-3)
P 		288.3
(-3)
P 		247
avr 491.2
(1.3) 		564.7
(3) 		379.4
(-1.4) 		320
(-2.8) 		311.9
(-3) 		335
(-2.5) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 177.5
(3)
P 		150.2
(1.7)
P 		167.9
(2.5)
P 		53.8
(-3)
P 		124
B 146.2
(1.5)
P 		168.3
(3)
P 		142.2
(1.2)
P 		80
(-3)
P 		88
C 126.9
(-0.3)
P 		221.7
(3)
P 		168.8
(1.1)
P 		51.2
(-3)
P 		171
avr 150.2
(1.5) 		180.1
(3) 		159.6
(2) 		61.7
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 93.3
(-2.3)
P 		224.6
(3)
P 		75.4
(-3)
P 		82.8
(-2.7)
P 		100.3
(-2)
P 		86.6
(-2.5)
P 		149
B 152.6
(1.4)
P 		175.5
(3)
P 		97.7
(-2.4)
P 		89.2
(-3)
P 		127.6
(-0.3)
P 		134.7
(0.2)
P 		86
C 196.1
(3)
P 		163.3
(1.6)
P 		99.2
(-1.3)
P 		59.6
(-3)
P 		93.5
(-1.5)
P 		96.5
(-1.4)
P 		137
avr 147.3
(0.8) 		187.8
(3) 		90.8
(-2.3) 		77.2
(-3) 		107.1
(-1.4) 		105.9
(-1.4) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5157
Sequence Type Exemplar sequence
Representative Public ID C41H7.6 NCBI
Target Description C41H7.6 /REP_DB=WormBase Gene ID /WP=CE08677 /TR=O17149 /GB=AAB70937.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062019 NCBI Caenorhabditis elegans C41H7.6 (C41H7.6) mRNA, complete cds. 11/11 A 
SNAP00000027504 ENSEMBL cdna:SNAP chromosome:CEL140:II:3000859:3002258:1 11/11 None
GENEFINDER00000027514 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3000859:3002336:1 11/11 None
C41H7.6 ENSEMBL cdna:known chromosome:CEL140:II:3000846:3002406:1 gene:C41H7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3000857-3002257(+) 99.48 100.0
Public Domain and Genome References
Gene Title
Ensembl C41H7.6
Entrez Gene 173646 Entrez gene
SwissProt O17149 EMBL-EBI
WormBase CE08677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 1.0E-157
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 1.0E-151
blast AAB70936 Hypothetical protein C41H7.5 [Caenorhabditis elegans] ref|NP_494421.2| C41H7.5 [Caenorhabditis elegans] 6.0E-87
blast AAB70936 Hypothetical protein C41H7.5 [Caenorhabditis elegans] ref|NP_494421.2| C41H7.5 [Caenorhabditis elegans] 4.0E-81
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 6.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027514 1 320-342
Sequence
Target Sequence 
>C. ELEGANS:181994_AT
aaaaatggatcgtgtctccaccgaggcctaccttcagaattgggagttctaccgacactt
ccgctattaccgtgagaccctcggacagtttgaggccaacctccgcggcgaacaatggac
cggagaggatcagccggccgacgatgatgacgatatcatctatgatgggattttcgaggt
ggagatggttgatagaacccgcgaagctcagccagcggagaatcaagggaatcaagaaga
gtaccatgtcgaggaggtcccgtatgctcaggaagagcaggtttatgagaatcagcagca
gaatcagcagacctacccaatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAATGGATCGTGTCTCCACCGAG 450 129 366 Antisense
GAGGCCTACCTTCAGAATTGGGAGT 193 405 388 Antisense
GACACTTCCGCTATTACCGTGAGAC 187 367 419 Antisense
TTACCGTGAGACCCTCGGACAGTTT 142 681 432 Antisense
CGGACAGTTTGAGGCCAACCTCCGC 91 241 447 Antisense
ACCTCCGCGGCGAACAATGGACCGG 479 83 464 Antisense
ACCCGCGAAGCTCAGCCAGCGGAGA 102 89 562 Antisense
AGTACCATGTCGAGGAGGTCCCGTA 119 63 605 Antisense
GAGGTCCCGTATGCTCAGGAAGAGC 412 401 619 Antisense
CAGCAGCAGAATCAGCAGACCTACC 207 205 658 Antisense
AGAATCAGCAGACCTACCCAATGCA 394 75 665 Antisense
Sequence Source Affymetrix Proprietary Database