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[181993_at]

Description T10E9.6 /REP_DB=WormBase Gene ID /WP=CE13553 /TR=O01601 /GB=AAB52473.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 03      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 38.3
(-2)
A 		12
(-3)
A 		55.8
(-1.3)
A 		163.8
(3)
P 		152
B 93.3
(3)
P 		68.3
(0.1)
A 		41.8
(-3)
A 		57.1
(-1.2)
P 		52
C 19.5
(-2.5)
A 		49.7
(-1.1)
A 		7.6
(-3)
A 		143.2
(3)
P 		136
avr 50.4
(-1.9) 		43.3
(-2.4) 		35.1
(-3) 		121.4
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 12.1
(-2.7)
A 		3.7
(-3)
A 		39.3
(-1.6)
A 		39.4
(-1.5)
A 		84.5
(0.3)
P 		151.1
(3)
P 		147
B 24.1
(-3)
A 		51.3
(-0.7)
A 		28.5
(-2.6)
A 		58.6
(-0)
A 		70.9
(1)
P 		93.7
(3)
P 		70
C 23.3
(-1.7)
A 		79.8
(2.3)
P 		5.8
(-3)
A 		63.6
(1.2)
A 		67.5
(1.4)
P 		89.1
(3)
P 		83
avr 19.8
(-3) 		44.9
(-1.4) 		24.5
(-2.7) 		53.9
(-0.8) 		74.3
(0.6) 		111.3
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 13.9
(0.2)
A 		2.6
(-3)
A 		14.6
(0.4)
A 		24
(3)
P 		21
B 29.8
(3)
P 		16.9
(-0.9)
A 		9.7
(-3)
A 		12.2
(-2.3)
P 		20
C 6.4
(-1.9)
A 		14.3
(0.3)
A 		2.6
(-3)
A 		24.1
(3)
P 		22
avr 16.7
(1.2) 		11.3
(-1.8) 		9
(-3) 		20.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.2
(-2.8)
A 		1.3
(-3)
A 		8.6
(-1.8)
A 		10
(-1.5)
A 		25.5
(1.1)
P 		36.8
(3)
P 		36
B 8.4
(-2.7)
A 		17.1
(-0.8)
A 		6.9
(-3)
A 		15.5
(-1.2)
A 		28.8
(1.7)
P 		34.9
(3)
P 		28
C 8.6
(-1.5)
A 		24.4
(1.9)
P 		1.5
(-3)
A 		12.8
(-0.6)
A 		21.9
(1.3)
P 		29.8
(3)
P 		28
avr 6.4
(-2.9) 		14.3
(-1.2) 		5.7
(-3) 		12.8
(-1.5) 		25.4
(1.2) 		33.8
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1615
Sequence Type Exemplar sequence
Representative Public ID T10E9.6 NCBI
Target Description T10E9.6 /REP_DB=WormBase Gene ID /WP=CE13553 /TR=O01601 /GB=AAB52473.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059479 NCBI Caenorhabditis elegans T10E9.6 (T10E9.6) mRNA, complete cds. 11/11 None
SNAP00000042989 ENSEMBL cdna:SNAP chromosome:CEL140:I:6537352:6538188:-1 11/11 None
T10E9.6 ENSEMBL cdna:known chromosome:CEL140:I:6537352:6538188:-1 gene:T10E9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6537280-6538117(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10E9.6
Entrez Gene 188384 Entrez gene
SwissProt O01601 EMBL-EBI
WormBase CE13553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52473 Hypothetical protein T10E9.6 [Caenorhabditis elegans] ref|NP_491880.1| T10E9.6 [Caenorhabditis elegans] 1.0E-66
blast CAE58460 Hypothetical protein CBG01600 [Caenorhabditis briggsae] 2.0E-18
blast CAA93481 Hypothetical protein C36H8.1 [Caenorhabditis elegans] ref|NP_502434.1| C36H8.1 [Caenorhabditis elegans] 9.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR004345 EMBL-EBI TB2/DP1 and HVA22 related protein 1.2E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491880.1 4 33-55,62-79,84-101,108-125
T10E9.6 4 33-55,62-79,84-101,108-125
SNAP00000042989 4 33-55,62-79,84-101,108-125
Sequence
Target Sequence 
>C. ELEGANS:181993_AT
aagtttggttcatcaatctcattcacaatgagaaatatttcacggcgagatgggccaaaa
gatatagtgaagtcactggaatcgaagttgaatcgttgatcaaaggaacaattctctttc
ttcttggattgttgcttgtgctcaaagagcctcactacttggcaaacggactactcgtaa
ttgctcccattattttgacatacttgggaccatcggatagacctgaaacaggaataatgt
tcatttattggacaattttcggatttttttatcttttcgatcgaatcttggagtatattc
cattgtattatatcatcaaacttgccgtattcattggacttttcttgccaccatctaacc
caactatcgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTGGTTCATCAATCTCATTCA 76 157 38 Antisense
ATATTTCACGGCGAGATGGGCCAAA 631 19 72 Antisense
TTCTCTTTCTTCTTGGATTGTTGCT 228 693 149 Antisense
GTTGCTTGTGCTCAAAGAGCCTCAC 431 439 168 Antisense
GAGCCTCACTACTTGGCAAACGGAC 569 385 184 Antisense
AACGGACTACTCGTAATTGCTCCCA 499 143 202 Antisense
ATTTTGACATACTTGGGACCATCGG 576 13 229 Antisense
GGGACCATCGGATAGACCTGAAACA 280 493 243 Antisense
AAACTTGCCGTATTCATTGGACTTT 72 129 355 Antisense
TTCATTGGACTTTTCTTGCCACCAT 665 687 367 Antisense
CACCATCTAACCCAACTATCGAATT 395 201 386 Antisense
Sequence Source Affymetrix Proprietary Database