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[181991_s_at]

Description W03G9.7 /REP_DB=WormBase Gene ID /WP=CE14566 /TR=O44754 /GB=AAB96734.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 34.8
(0.6)
A 		13.7
(-3)
A 		49.3
(3)
A 		38.6
(1.2)
A 		36
B 32.2
(-0.6)
A 		67.5
(3)
A 		44.3
(0.6)
A 		9
(-3)
A 		59
C 34.2
(-1.7)
A 		59.1
(1.4)
A 		23.8
(-3)
A 		71.5
(3)
A 		48
avr 33.7
(-3) 		46.8
(3) 		39.1
(-0.5) 		39.7
(-0.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 19.5
(-1.9)
A 		53.1
(3)
A 		16.6
(-2.3)
A 		16.4
(-2.3)
A 		11.7
(-3)
A 		31
(-0.2)
A 		41
B 43.8
(1.8)
A 		53
(3)
A 		13.1
(-2.2)
A 		11.5
(-2.4)
A 		25.5
(-0.6)
A 		7.2
(-3)
A 		46
C 35.1
(0.8)
A 		30.6
(0.1)
A 		48.4
(3)
A 		45.2
(2.5)
A 		30.9
(0.1)
A 		11.9
(-3)
A 		37
avr 32.8
(0.3) 		45.6
(3) 		26
(-1.1) 		24.4
(-1.4) 		22.7
(-1.8) 		16.7
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.7
(2.9)
A 		3
(-3)
A 		12.9
(3)
A 		5.7
(-1.4)
A 		10
B 10.3
(0.4)
A 		16.7
(3)
A 		10.3
(0.4)
A 		1.9
(-3)
A 		15
C 11.3
(-0.9)
A 		17
(3)
A 		8.3
(-3)
A 		12.1
(-0.4)
A 		9
avr 11.4
(2.1) 		12.2
(3) 		10.5
(1.2) 		6.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.6
(-3)
A 		18.9
(3)
A 		3.6
(-3)
A 		4.2
(-2.7)
A 		3.5
(-3)
A 		7.6
(-1.4)
A 		15
B 15.2
(2)
A 		17.7
(3)
A 		3.2
(-2.8)
A 		3.1
(-2.8)
A 		10.4
(0.1)
A 		2.7
(-3)
A 		15
C 13
(3)
A 		9.3
(0.5)
A 		12.3
(2.5)
A 		9.1
(0.4)
A 		10
(1)
A 		4
(-3)
A 		9
avr 10.6
(0.3) 		15.3
(3) 		6.4
(-2.1) 		5.5
(-2.6) 		8
(-1.2) 		4.8
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181991_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2230
Sequence Type Exemplar sequence
Representative Public ID W03G9.7 NCBI
Target Description W03G9.7 /REP_DB=WormBase Gene ID /WP=CE14566 /TR=O44754 /GB=AAB96734.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059092 NCBI Caenorhabditis elegans W03G9.7 (W03G9.7) mRNA, complete cds. 11/11 None
W03G9.7 ENSEMBL cdna:known chromosome:CEL140:I:4986955:4989405:-1 gene:W03G9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4986956-4990390(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03G9.7
Entrez Gene 172121 Entrez gene
SwissProt O44754 EMBL-EBI
WormBase CE33195 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491493 W03G9.7 [Caenorhabditis elegans] gb|AAB96734.2| Hypothetical protein W03G9.7 [Caenorhabditis elegans] 0.0
blast CAE65700 Hypothetical protein CBG10775 [Caenorhabditis briggsae] 0.0
blast XP_782060 PREDICTED: similar to putative N-myristoylated nuclear protein, with 6 coiled coil-4 domains, of bilaterial origin (1F556) [Strongylocentrotus purpuratus] 4.0E-42
Sequence
Target Sequence 
>C. ELEGANS:181991_S_AT
gagactcaacaaaaagtagccgctttgattcaatggtttgataaagtgataaatgataca
attcgaaaagatttggatcaagcaaacaatgagttgattaagaaacagaaggcattgaga
gaagagagacttactttgatgaaaaaattggccaaggcacaacttgatatcgacatgaaa
attgattatgatgacgtggcagatgatgaactggagcgagaattgaaagagctggaacga
caagctcttcgagacgtggagaagttgaaggaagcggatgttcaaggaattttggacctg
ggaaaatccgatgggcacatcgtaacaccgttgaacaaattggctccgctgccctcgaaa
gatgcattatttggagatgtgaagcagaagttggatgagtatgatgaaacgagaaaacaa
tttgaaagacggaataatctgcagagggagaaacaagcaatggcattacaggagaagttg
aagttgaggcagcagaaaaatcgaagaaatagaaaggaaaggagggatagtattggaaca
cctccattggagcaacctgtcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTCAACAAAAAGTAGCCGCTT 492 393 1618 Antisense
AAAGTAGCCGCTTTGATTCAATGGT 190 123 1630 Antisense
AGGCACAACTTGATATCGACATGAA 504 53 1772 Antisense
GTGGCAGATGATGAACTGGAGCGAG 115 491 1813 Antisense
GGAACGACAAGCTCTTCGAGACGTG 58 529 1851 Antisense
GGACCTGGGAAAATCCGATGGGCAC 213 523 1911 Antisense
ATGGGCACATCGTAACACCGTTGAA 405 49 1928 Antisense
GTTGAACAAATTGGCTCCGCTGCCC 292 439 1947 Antisense
TCCGCTGCCCTCGAAAGATGCATTA 357 595 1962 Antisense
GGAGAAGTTGAAGTTGAGGCAGCAG 424 519 2088 Antisense
ACCTCCATTGGAGCAACCTGTCAAA 689 87 2157 Antisense
Sequence Source Affymetrix Proprietary Database