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[181990_at]

Description F22G12.1 /REP_DB=WormBase Gene ID /WP=CE15888 /TR=O45395 /GB=CAB07365.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2
(-1.8)
A 		1.1
(-3)
A 		1.1
(-3)
A 		5.7
(3)
A 		5
B 1.8
(-0.6)
A 		2.7
(3)
A 		1.9
(-0.2)
A 		1.2
(-3)
A 		2
C 2.4
(-2.7)
A 		1.4
(-3)
A 		10.5
(-0.6)
A 		24.3
(3)
A 		23
avr 2.1
(-2.7) 		1.7
(-3) 		4.5
(-1.1) 		10.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 1.1
(-3)
A 		22.6
(0.3)
A 		39.8
(3)
A 		2.3
(-2.8)
A 		10.7
(-1.5)
A 		1.4
(-3)
A 		39
B 1.4
(-3)
A 		7.4
(0.5)
A 		11.8
(3)
A 		10.7
(2.4)
A 		1.4
(-3)
A 		2.7
(-2.3)
A 		10
C 2.3
(-1)
A 		3.4
(0.7)
A 		4.9
(3)
A 		4.2
(1.9)
A 		1
(-3)
A 		2.7
(-0.4)
A 		4
avr 1.6
(-3) 		11.1
(0.3) 		18.8
(3) 		5.7
(-1.6) 		4.4
(-2) 		2.3
(-2.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.7
(2)
A 		0.2
(-3)
A 		0.3
(-2)
A 		0.8
(3)
A 		1
B 0.6
(1.5)
A 		0.7
(3)
A 		0.4
(-1.5)
A 		0.3
(-3)
A 		0
C 0.8
(-2.4)
A 		0.4
(-3)
A 		3.6
(2.2)
A 		4.1
(3)
A 		4
avr 0.7
(-1.6) 		0.4
(-3) 		1.4
(1.6) 		1.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.2
(-3)
A 		8
(2.5)
A 		8.7
(3)
A 		0.6
(-2.7)
A 		3.2
(-0.9)
A 		0.3
(-2.9)
A 		9
B 0.5
(-3)
A 		2.5
(2)
A 		2.9
(3)
A 		2.8
(2.8)
A 		0.6
(-2.8)
A 		1
(-1.8)
A 		2
C 0.9
(1)
A 		1
(1.7)
A 		1.2
(3)
A 		0.9
(1)
A 		0.3
(-3)
A 		0.9
(1)
A 		1
avr 0.5
(-3) 		3.8
(2.2) 		4.3
(3) 		1.4
(-1.6) 		1.4
(-1.6) 		0.7
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1240
Sequence Type Exemplar sequence
Representative Public ID F22G12.1 NCBI
Target Description F22G12.1 /REP_DB=WormBase Gene ID /WP=CE15888 /TR=O45395 /GB=CAB07365.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060901 NCBI Caenorhabditis elegans F22G12.1 (F22G12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000002521 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13148526:13155025:1 9/11 None
F22G12.1 ENSEMBL cdna:known chromosome:CEL140:I:13148526:13153714:1 gene:F22G12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002511 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13148456-13153645(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22G12.1
Entrez Gene 184866 Entrez gene
SwissProt O45395 EMBL-EBI
WormBase CE15888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07365 Hypothetical protein F22G12.1 [Caenorhabditis elegans] ref|NP_493302.1| F22G12.1 [Caenorhabditis elegans] 0.0
blast CAI79120 Hypothetical protein C17H1.10 [Caenorhabditis elegans] ref|NP_001021002.1| C17H1.10 [Caenorhabditis elegans] 1.0E-62
blast CAI79120 Hypothetical protein C17H1.10 [Caenorhabditis elegans] ref|NP_001021002.1| C17H1.10 [Caenorhabditis elegans] 4.0E-62
blast CAB07169 Hypothetical protein C17H1.5 [Caenorhabditis elegans] ref|NP_493297.1| C17H1.5 [Caenorhabditis elegans] 5.0E-61
blast CAB07169 Hypothetical protein C17H1.5 [Caenorhabditis elegans] ref|NP_493297.1| C17H1.5 [Caenorhabditis elegans] 2.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002521 1 946-968
Sequence
Target Sequence 
>C. ELEGANS:181990_AT
agcacttctagactttctggtggaaattgaacggaaaaatcatgctgctaacgtgatcaa
tgacagcgagcacttcgcgtttaataacataagaaggagagtgccagtaataatgctaga
agaattcaagcaggtattcaaccagtatttggaaaatttcaaaaagacggaaaacaggcc
acattcacacgaagaaaagggaatgatgcaaatagaaaaatcaaattacaaagacattat
cataaaacttttcgaatcacgcacggaacgatggatgaaaaatcggataaatgagttgtg
tgacaagaaaatttcaataaaccgtgaattaatcaataagaaaaacgaattgcgcacagc
tgaagaacgacttgaaaaggctctttgtgaaatgcgagaagaaaccactgaagaacgtca
agaactttacgattgtactgtggttgcggagctccatgaacatatatcaagagaagaccg
tttattggcagtatttgaacaatatagtcagatgcaacaggccagattaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACTTCTAGACTTTCTGGTGGAA 238 77 1692 Antisense
CATGCTGCTAACGTGATCAATGACA 228 211 1732 Antisense
ATGACAGCGAGCACTTCGCGTTTAA 497 43 1751 Antisense
GGAAAACAGGCCACATTCACACGAA 319 527 1860 Antisense
ACTTTTCGAATCACGCACGGAACGA 308 99 1938 Antisense
ATTGCGCACAGCTGAAGAACGACTT 698 5 2040 Antisense
GAACGTCAAGAACTTTACGATTGTA 70 349 2104 Antisense
GATTGTACTGTGGTTGCGGAGCTCC 556 433 2122 Antisense
GCGGAGCTCCATGAACATATATCAA 614 293 2137 Antisense
GAAGACCGTTTATTGGCAGTATTTG 665 335 2164 Antisense
GTCAGATGCAACAGGCCAGATTACA 427 465 2198 Antisense
Sequence Source Affymetrix Proprietary Database