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[181989_at]

Description ZC581.6 /REP_DB=WormBase Gene ID /WP=CE15245 /TR=O01771 /GB=AAB54144.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 4.4
(3)
A 		4
(1.8)
A 		4
(1.8)
A 		2.4
(-3)
A 		2
B 4
(-3)
A 		4.3
(-2.8)
A 		4.7
(-2.6)
A 		14.6
(3)
A 		11
C 2.4
(-3)
A 		2.6
(-3)
A 		3.7
(-2.9)
A 		75.2
(3)
P 		73
avr 3.6
(-3) 		3.6
(-3) 		4.1
(-2.9) 		30.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 3.9
(-2.8)
A 		2.5
(-3)
A 		5.9
(-2.4)
A 		25.5
(0.8)
A 		30.3
(1.6)
A 		38.6
(3)
A 		36
B 4.9
(-2.9)
A 		17.5
(-1.9)
A 		6.5
(-2.8)
A 		4
(-3)
A 		42.9
(0.1)
A 		80.3
(3)
P 		76
C 1.5
(-3)
A 		31.5
(-0.1)
A 		16.7
(-1.5)
A 		6.8
(-2.5)
A 		39.4
(0.7)
A 		63.2
(3)
M 		62
avr 3.4
(-3) 		17.2
(-1.6) 		9.7
(-2.3) 		12.1
(-2.1) 		37.5
(0.6) 		60.7
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.6
(3)
A 		0.9
(-0.2)
A 		1.1
(0.7)
A 		0.3
(-3)
A 		1
B 1.3
(-2.4)
A 		1.1
(-3)
A 		1.1
(-3)
A 		3.1
(3)
A 		2
C 0.8
(-3)
A 		0.7
(-3)
A 		1.3
(-2.7)
A 		12.7
(3)
P 		12
avr 1.2
(-2.6) 		0.9
(-3) 		1.2
(-2.6) 		5.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.9
(-2.9)
A 		1.3
(-2.6)
A 		6.5
(1)
A 		9.2
(2.9)
A 		9.4
(3)
A 		9
B 1.7
(-2.9)
A 		5.8
(-2)
A 		1.6
(-2.9)
A 		1
(-3)
A 		17.4
(0.4)
A 		30
(3)
P 		29
C 0.6
(-3)
A 		9.6
(-0.4)
A 		4.3
(-1.9)
A 		1.4
(-2.8)
A 		12.7
(0.5)
A 		21.1
(3)
M 		21
avr 1
(-3) 		5.4
(-1.6) 		2.4
(-2.6) 		3
(-2.4) 		13.1
(0.8) 		20.2
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1144
Sequence Type Exemplar sequence
Representative Public ID ZC581.6 NCBI
Target Description ZC581.6 /REP_DB=WormBase Gene ID /WP=CE15245 /TR=O01771 /GB=AAB54144.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059509 NCBI Caenorhabditis elegans TRYpsin-like Protease family member (try-7) (try-7) mRNA, complete cds. 11/11 None
GENEFINDER00000015892 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6648352:6650751:-1 10/11 None
SNAP00000015881 ENSEMBL cdna:SNAP chromosome:CEL140:I:6648826:6650751:-1 10/11 None
ZC581.6 ENSEMBL cdna:known chromosome:CEL140:I:6648826:6651549:-1 gene:ZC581.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6648754-6651478(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol try-7
Ensembl ZC581.6
Entrez Gene 191201 Entrez gene
SwissProt O01771 EMBL-EBI
WormBase CE15245 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4295 trypsin activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54144 Trypsin-like protease protein 7 [Caenorhabditis elegans] ref|NP_491910.1| TRYpsin-like Protease family member (try-7) [Caenorhabditis elegans] 0.0
blast CAE67250 Hypothetical protein CBG12690 [Caenorhabditis briggsae] 1.0E-102
blast CAE67250 Hypothetical protein CBG12690 [Caenorhabditis briggsae] 1.0E-101
blast CAE67250 Hypothetical protein CBG12690 [Caenorhabditis briggsae] 5.0E-83
blast CAE67215 Hypothetical protein CBG12651 [Caenorhabditis briggsae] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 5.9E-9
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 5.9E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000015892 1 352-371
Sequence
Target Sequence 
>C. ELEGANS:181989_AT
cggattaaatccaccttctgatattaatcaaaacggtgtcgataatacaggtcaattgag
atatgagaaaatcgaggtttttcgttcacatccgatggaaatttactttttccaagcaag
agatataactgataaaacagtggcatgtgttgtaagtttgaaaatactgattttaaataa
aacacaagcgtcacttaatatttctttgaagggtgacagtggtggtggtgcaatagctga
tgttaaaggaaaaaagacaattataggagtcctgtcacaaactagctgtcaaaaacgacg
aggtggtaacgaaacaatggaactgtactcttctgttggattctacaaaaatcaaatttg
caagtacactggcatttgtgataaagctgattcttataataaatatcataaaggatatat
tagaacacaaaaaccggttcgtacaaccgaagctccacgggaagcaaacgctcgagactt
gaaacccgggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGATTAAATCCACCTTCTGATATT 231 241 993 Antisense
AACGGTGTCGATAATACAGGTCAAT 13 145 1024 Antisense
CGAGGTTTTTCGTTCACATCCGATG 387 249 1065 Antisense
CAAGCGTCACTTAATATTTCTTTGA 520 185 1177 Antisense
GGTGGTGGTGCAATAGCTGATGTTA 22 501 1213 Antisense
GGAGTCCTGTCACAAACTAGCTGTC 229 517 1258 Antisense
GGAACTGTACTCTTCTGTTGGATTC 96 531 1311 Antisense
AATTTGCAAGTACACTGGCATTTGT 485 173 1347 Antisense
GTACAACCGAAGCTCCACGGGAAGC 325 459 1433 Antisense
GCTCCACGGGAAGCAAACGCTCGAG 643 297 1444 Antisense
CGCTCGAGACTTGAAACCCGGGTCA 71 245 1461 Antisense
Sequence Source Affymetrix Proprietary Database