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[181988_at] 7TM chemoreceptor, srw family

Description H25K10.7 /REP_DB=WormBase Gene ID /WP=CE19939 /TR=Q9U3D1 /GB=CAB63232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 11      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 2.6
(-3)
A 		13.5
(-1.9)
A 		4.1
(-2.8)
A 		61.4
(3)
A 		59
B 5.7
(0.4)
A 		8.2
(3)
A 		2.5
(-3)
A 		4.2
(-1.2)
A 		6
C 19.1
(3)
A 		4.5
(-2.2)
A 		2.4
(-3)
A 		15.8
(1.8)
A 		17
avr 9.1
(-1.5) 		8.7
(-1.6) 		3
(-3) 		27.1
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.5
(0.8)
A 		3.3
(-2.5)
A 		4.3
(-1.5)
A 		2.8
(-3)
A 		8.7
(3)
A 		6
(0.3)
A 		6
B 8.1
(-0.1)
A 		4.7
(-3)
A 		7.7
(-0.4)
A 		11.7
(3)
A 		7.5
(-0.6)
A 		10.2
(1.7)
A 		7
C 4.7
(-1.9)
A 		4.7
(-1.9)
A 		4
(-2.2)
A 		7.2
(-0.8)
A 		16.4
(3)
A 		2
(-3)
A 		14
avr 6.4
(-1) 		4.2
(-3) 		5.3
(-2) 		7.2
(-0.3) 		10.9
(3) 		6.1
(-1.3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-3)
A 		2.9
(-1.5)
A 		1.1
(-2.9)
A 		9
(3)
A 		8
B 1.8
(2.1)
A 		2
(3)
A 		0.6
(-3)
A 		0.9
(-1.7)
A 		1
C 6.3
(3)
A 		1.3
(-2.5)
A 		0.8
(-3)
A 		2.7
(-0.9)
A 		6
avr 3
(0.9) 		2.1
(-0.7) 		0.8
(-3) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.2
(-1.4)
A 		1.2
(-1.4)
A 		0.9
(-2.4)
A 		0.7
(-3)
A 		2.6
(3)
A 		1.5
(-0.5)
A 		2
B 2.8
(0.3)
A 		1.6
(-3)
A 		1.9
(-2.2)
A 		3.1
(1.1)
A 		3.1
(1.1)
A 		3.8
(3)
A 		2
C 1.7
(-1.7)
A 		1.4
(-2.1)
A 		1
(-2.6)
A 		1.4
(-2.1)
A 		5.3
(3)
A 		0.7
(-3)
A 		5
avr 1.9
(-1.5) 		1.4
(-2.8) 		1.3
(-3) 		1.7
(-2) 		3.7
(3) 		2
(-1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9586
Sequence Type Exemplar sequence
Representative Public ID H25K10.7 NCBI
Target Description H25K10.7 /REP_DB=WormBase Gene ID /WP=CE19939 /TR=Q9U3D1 /GB=CAB63232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070525 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-61) (srw-61) mRNA, complete cds. 11/11 None
H25K10.7 ENSEMBL cdna:known chromosome:CEL140:IV:16236780:16238616:-1 gene:H25K10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16236785-16238622(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-61
Ensembl H25K10.7
Entrez Gene 186783 Entrez gene
SwissProt Q9U3D1 EMBL-EBI
WormBase CE19939 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63232 Hypothetical protein H25K10.7 [Caenorhabditis elegans] ref|NP_502926.1| Serpentine Receptor, class W family member (srw-61) [Caenorhabditis elegans] 0.0
blast CAA19493 Hypothetical protein Y37A1B.10 [Caenorhabditis elegans] ref|NP_502686.2| Serpentine Receptor, class W family member (srw-63) [Caenorhabditis elegans] 8.0E-83
blast AAC68708 Serpentine receptor, class w protein 60 [Caenorhabditis elegans] ref|NP_494412.2| Serpentine Receptor, class W family member (srw-60) [Caenorhabditis elegans] 4.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502926.1 8 40-57,67-89,140-157,172-194,232-254,269-291,311-333,353-372
H25K10.7 8 40-57,67-89,140-157,172-194,232-254,269-291,311-333,353-372
Sequence
Target Sequence 
>C. ELEGANS:181988_AT
ttagtcagtgttccggtatacccgattatattgtaccgcacacttatataattaaaaaag
gtagggtgtttgatgacttttggccgcttgcagttcaactgtattttttttcggatggga
tttcaaaggtgggttgtgtggcgtttgaaatgaaaacctgcgtatatacatttttcaaca
ataattttcgattccagattatcccagctgtctgtctcccatttctatgcattgttcttg
taacttgcctcagaacagcgcgtgaatcacgcaaaaacctatcgaaaagctcttccaaca
atgatcgaactatttatatggtaactataatgaccgcattttcggtgtttgcagaaggac
ccagtgggattagttatttattcaaagcattatattatgatcacaatgctataaaaagcg
cattgcaaaccctcgacgaaattctgatcaatgcagctattctcaattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGTCAGTGTTCCGGTATACCCGA 333 681 629 Antisense
TACCCGATTATATTGTACCGCACAC 182 649 647 Antisense
GGGTGTTTGATGACTTTTGGCCGCT 665 495 692 Antisense
TTGGCCGCTTGCAGTTCAACTGTAT 137 701 708 Antisense
CGATTCCAGATTATCCCAGCTGTCT 175 249 817 Antisense
GTCTCCCATTTCTATGCATTGTTCT 292 471 842 Antisense
GCATTGTTCTTGTAACTTGCCTCAG 311 307 857 Antisense
ACTTGCCTCAGAACAGCGCGTGAAT 96 105 871 Antisense
GAAAAGCTCTTCCAACAATGATCGA 228 355 912 Antisense
AAAAAGCGCATTGCAAACCCTCGAC 486 129 1041 Antisense
GATCAATGCAGCTATTCTCAATTCA 260 421 1074 Antisense
Sequence Source Affymetrix Proprietary Database