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[181987_at]

Description T23B3.6 /REP_DB=WormBase Gene ID /WP=CE14018 /TR=P91489 /GB=AAB42335.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 06      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 14      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1169
1 2 3 4 range
A 1062.9
(3)
P 		124.4
(-2.9)
P 		110.1
(-3)
P 		619.1
(0.2)
P 		953
B 984.6
(3)
P 		157.5
(-2.6)
P 		104.6
(-3)
P 		786.2
(1.6)
P 		880
C 1273.1
(3)
P 		209.3
(-2.7)
P 		158
(-3)
P 		608.4
(-0.6)
P 		1115
avr 1106.9
(3) 		163.7
(-2.8) 		124.2
(-3) 		671.2
(0.3) 		983

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 976
1 2 3 4 5 6 range
A 1186.1
(3)
P 		834.6
(0.8)
P 		648.7
(-0.3)
P 		426.1
(-1.7)
P 		312.1
(-2.4)
P 		210.3
(-3)
P 		976
B 1110.1
(3)
P 		884.9
(1.4)
P 		618.8
(-0.4)
P 		498.4
(-1.2)
P 		273.2
(-2.8)
P 		239.5
(-3)
P 		871
C 1051.2
(3)
P 		854.9
(1.5)
P 		482.9
(-1.3)
P 		543.3
(-0.9)
P 		260.7
(-3)
P 		281.7
(-2.8)
P 		791
avr 1115.8
(3) 		858.1
(1.2) 		583.5
(-0.7) 		489.3
(-1.3) 		282
(-2.7) 		243.8
(-3) 		872
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 387
(3)
P 		27
(-3)
P 		28.8
(-3)
P 		90.6
(-1.9)
P 		360
B 314
(3)
P 		38.9
(-2.7)
P 		24.2
(-3)
P 		167.5
(-0)
P 		290
C 421.4
(3)
P 		60.2
(-2.9)
P 		55.1
(-3)
P 		102.6
(-2.2)
P 		366
avr 374.1
(3) 		42
(-2.9) 		36
(-3) 		120.2
(-1.5) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 218.7
(1.1)
P 		296.8
(3)
P 		141.3
(-0.8)
P 		108.1
(-1.6)
P 		94.2
(-1.9)
P 		51.2
(-3)
P 		246
B 386.3
(3)
P 		294.6
(1.1)
P 		150.3
(-1.8)
P 		132
(-2.1)
P 		111
(-2.6)
P 		89.3
(-3)
P 		297
C 389.6
(3)
P 		260.9
(0.5)
P 		122.9
(-2.2)
P 		109.3
(-2.5)
P 		84.3
(-3)
P 		94.3
(-2.8)
P 		305
avr 331.5
(3) 		284.1
(1.9) 		138.2
(-1.6) 		116.5
(-2.1) 		96.5
(-2.6) 		78.3
(-3) 		253
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2533
Sequence Type Exemplar sequence
Representative Public ID T23B3.6 NCBI
Target Description T23B3.6 /REP_DB=WormBase Gene ID /WP=CE14018 /TR=P91489 /GB=AAB42335.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059519 NCBI Caenorhabditis elegans T23B3.6 (T23B3.6) mRNA, complete cds. 11/11 None
SNAP00000020982 ENSEMBL cdna:SNAP chromosome:CEL140:I:6714946:6716763:-1 11/11 None
GENEFINDER00000020991 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6714946:6716763:-1 11/11 None
T23B3.6 ENSEMBL cdna:known chromosome:CEL140:I:6714905:6717340:-1 gene:T23B3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6714874-6716692(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B3.6
Entrez Gene 188775 Entrez gene
SwissProt P91489 EMBL-EBI
WormBase CE30693 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42335 Hypothetical protein T23B3.6 [Caenorhabditis elegans] ref|NP_491920.2| T23B3.6 [Caenorhabditis elegans] 0.0
blast CAE67260 Hypothetical protein CBG12705 [Caenorhabditis briggsae] 1.0E-149
blast CAE67260 Hypothetical protein CBG12705 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491920.2 6 26-48,60-82,93-115,136-158,185-207,233-255
T23B3.6 6 26-48,60-82,93-115,136-158,185-207,233-255
SNAP00000020982 6 41-63,76-98,109-131,152-174,201-223,249-271
GENEFINDER00000020991 6 41-63,76-98,109-131,152-174,201-223,249-271
Sequence
Target Sequence 
>C. ELEGANS:181987_AT
ttgactttcgttgcaattctctcacttgttttgtctattctctatcagaaactatgtgga
gtctatactcattatgatgctgccacaaacacaattcaaatgatggcgactagcactgct
gagccattcacaattgccgtctatgcattgccactgttgtcaattgtgttctatgtagta
gcatataacaatctccgtgacaaaaggcagttggttacaagtgacaaaacaaaatcactt
attgatagagctgagagaaagactttgaagattggaatgctcattttagtcacatatacg
ctctccctcgtcgttcaccttatcatggtgtttgccgtcaacagcgaaacattcagtacc
tttttcagccgaattgatgaaattgtctcatgtgctccacaggttgctattccattggct
cttctcagttgtaacaaaaaactcattttcaacgagaaatcgtcttcatcagtatcacat
tctggaacagctcaggatatcttcactcgggaaaccatcaccaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGACTTTCGTTGCAATTCTCTCAC 256 705 487 Antisense
ATTCTCTCACTTGTTTTGTCTATTC 323 11 502 Antisense
GATGGCGACTAGCACTGCTGAGCCA 638 405 588 Antisense
ACAATTGCCGTCTATGCATTGCCAC 362 113 616 Antisense
ATTTTAGTCACATATACGCTCTCCC 245 15 769 Antisense
AAACATTCAGTACCTTTTTCAGCCG 84 129 833 Antisense
TGAAATTGTCTCATGTGCTCCACAG 164 573 864 Antisense
ACAGGTTGCTATTCCATTGGCTCTT 214 107 885 Antisense
GAAATCGTCTTCATCAGTATCACAT 589 361 942 Antisense
AACAGCTCAGGATATCTTCACTCGG 384 135 972 Antisense
TTCACTCGGGAAACCATCACCAACA 214 687 988 Antisense
Sequence Source Affymetrix Proprietary Database