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[181985_s_at]

Description M04C9.6C /REP_DB=WormBase Gene ID /WP=CE23874 /TR=Q9U3A8 /GB=CAB54273.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 153.2
(1.7)
A 		159.9
(2.5)
A 		109.5
(-3)
A 		164.8
(3)
A 		55
B 188.9
(3)
A 		170
(1.9)
A 		118
(-1.3)
A 		88.9
(-3)
A 		100
C 207.4
(3)
A 		104.9
(-3)
A 		147.5
(-0.5)
A 		172.2
(0.9)
A 		103
avr 183.2
(3) 		144.9
(-0.9) 		125
(-3) 		142
(-1.2) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 164.4
(1.1)
A 		201.5
(3)
A 		95.9
(-2.3)
A 		166.8
(1.3)
A 		81.3
(-3)
A 		151.8
(0.5)
A 		120
B 151
(3)
A 		106.3
(-0.5)
A 		87.1
(-2)
A 		74.7
(-3)
A 		96.4
(-1.3)
A 		93.1
(-1.6)
A 		76
C 234
(3)
A 		132.1
(-1.4)
A 		162.6
(-0.1)
A 		109.7
(-2.3)
A 		131.6
(-1.4)
A 		93.9
(-3)
A 		140
avr 183.1
(3) 		146.6
(0.3) 		115.2
(-2.1) 		117.1
(-2) 		103.1
(-3) 		112.9
(-2.3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 55.8
(3)
A 		34.7
(-1)
A 		28.6
(-2.1)
A 		24.1
(-3)
A 		32
B 60.2
(3)
A 		42
(0.4)
A 		27.4
(-1.8)
A 		18.9
(-3)
A 		41
C 68.6
(3)
A 		30.2
(-2.8)
A 		51.4
(0.4)
A 		29
(-3)
A 		40
avr 61.5
(3) 		35.6
(-1.1) 		35.8
(-1.1) 		24
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 30.3
(-1.9)
A 		71.7
(3)
A 		20.9
(-3)
A 		42.3
(-0.5)
A 		24.5
(-2.6)
A 		37
(-1.1)
A 		51
B 52.5
(3)
A 		35.4
(-0.1)
A 		21.1
(-2.8)
A 		19.8
(-3)
A 		39.2
(0.6)
A 		34.7
(-0.3)
A 		33
C 86.7
(3)
A 		40.3
(-1.3)
A 		41.4
(-1.2)
A 		22.1
(-3)
A 		42.6
(-1.1)
A 		31.4
(-2.1)
A 		65
avr 56.5
(3) 		49.1
(1.5) 		27.8
(-3) 		28.1
(-2.9) 		35.4
(-1.4) 		34.4
(-1.6) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181985_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2481
Sequence Type Exemplar sequence
Representative Public ID M04C9.6C NCBI
Target Description M04C9.6C /REP_DB=WormBase Gene ID /WP=CE23874 /TR=Q9U3A8 /GB=CAB54273.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026217(11), NM_001026218(11), NM_001026219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026217 NCBI Caenorhabditis elegans F16A11.3a (F16A11.3) mRNA, complete cds. 11/11 None
NM_001026218 NCBI Caenorhabditis elegans F16A11.3b (F16A11.3) mRNA, complete cds. 11/11 None
NM_001026219 NCBI Caenorhabditis elegans F16A11.3c (F16A11.3) mRNA, complete cds. 11/11 None
SNAP00000035490 ENSEMBL cdna:SNAP chromosome:CEL140:I:9372900:9380249:-1 11/11 None
GENEFINDER00000035495 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9372900:9376227:-1 11/11 None
F16A11.3a ENSEMBL cdna:known chromosome:CEL140:I:9372297:9397708:-1 gene:F16A11.3 11/11 A 
F16A11.3b ENSEMBL cdna:known chromosome:CEL140:I:9372900:9397708:-1 gene:F16A11.3 11/11 A 
F16A11.3c ENSEMBL cdna:known chromosome:CEL140:I:9374677:9397757:-1 gene:F16A11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9374607-9380220(-) 100.0 100.0
Public Domain and Genome References
Ensembl F16A11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10801 Hypothetical protein F16A11.3a [Caenorhabditis elegans] emb|CAH10794.1| Hypothetical protein F16A11.3a [Caenorhabditis elegans] ref|NP_001021388.1| F16A11.3a [Caenorhabditis elegans] 0.0
blast T23714 hypothetical protein M04C9.6a - Caenorhabditis elegans 0.0
blast CAH10800 Hypothetical protein F16A11.3c [Caenorhabditis elegans] emb|CAH10793.1| Hypothetical protein F16A11.3c [Caenorhabditis elegans] ref|NP_001021390.1| F16A11.3c [Caenorhabditis elegans] 0.0
blast CAH10802 Hypothetical protein F16A11.3b [Caenorhabditis elegans] emb|CAH10795.1| Hypothetical protein F16A11.3b [Caenorhabditis elegans] ref|NP_001021389.1| F16A11.3b [Caenorhabditis elegans] 0.0
blast T23713 hypothetical protein M04C9.6b - Caenorhabditis elegans 0.0
blast T23715 hypothetical protein M04C9.6c - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000357 EMBL-EBI HEAT 8.7E-9
Pfam IPR000357 EMBL-EBI HEAT 2.7E-8
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Pfam IPR000357 EMBL-EBI HEAT 8.7E-9
Pfam IPR000357 EMBL-EBI HEAT 2.7E-8
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:181985_S_AT
aatggatctccgatatccacttcaccacgaagaaaagccaacagtacatctgaaccatct
ccaccaaacaccggaaacttgaaaagcgatgactccattgtaatgctcaatacggaagaa
aaggagaaactgggaattttagatttcgatgaaatgaacatgtcaatatcatcgaattca
tcgattcatggagaagccgcaatgacggaagattcggatattagtctaacttcgattgaa
caggcagcactccaacatgttccagtagatcttgttgaatcttatatgagagtcatgggg
ccgattggaggtagtggaagcggaggtggtggtaatggaagttctacaaccatagctact
ggagatccatcgctttgcgcggagacctatcgtcattgtgctcacaactttcccgcagtg
tgctatacgcttggacgtgctgcatggcctcggcttaagcttgtattccggaagcttgcg
atggatgagcaggctcgagttcgtcagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGATCTCCGATATCCACTTCAC 270 163 1915 Antisense
AACAGTACATCTGAACCATCTCCAC 269 137 1954 Antisense
CATCTCCACCAAACACCGGAAACTT 35 213 1970 Antisense
GATTGAACAGGCAGCACTCCAACAT 83 435 2148 Antisense
GAGAGTCATGGGGCCGATTGGAGGT 530 391 2202 Antisense
GCTACTGGAGATCCATCGCTTTGCG 348 303 2269 Antisense
GGAGACCTATCGTCATTGTGCTCAC 518 519 2295 Antisense
TCACAACTTTCCCGCAGTGTGCTAT 572 627 2316 Antisense
GTGCTATACGCTTGGACGTGCTGCA 286 479 2334 Antisense
TGGCCTCGGCTTAAGCTTGTATTCC 189 545 2359 Antisense
ATGAGCAGGCTCGAGTTCGTCAGTC 39 45 2399 Antisense
Sequence Source Affymetrix Proprietary Database