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[181983_at]

Description T05A8.6 /REP_DB=WormBase Gene ID /WP=CE18202 /TR=O44855 /GB=AAB95017.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 12.9
(-2.2)
A 		3.1
(-3)
A 		6.8
(-2.7)
A 		77.1
(3)
A 		74
B 6.7
(-3)
A 		12.5
(-2.5)
A 		16.9
(-2)
A 		70.7
(3)
A 		64
C 10
(-2.6)
A 		5.6
(-3)
A 		8.4
(-2.8)
A 		74.2
(3)
A 		69
avr 9.9
(-2.7) 		7.1
(-3) 		10.7
(-2.7) 		74
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 6.5
(-3)
A 		7.1
(-3)
A 		76.9
(-2.1)
A 		498.7
(3)
P 		261.3
(0.1)
P 		10.4
(-3)
A 		492
B 5.9
(-3)
A 		5.6
(-3)
A 		98.2
(-1.3)
A 		314.2
(2.7)
P 		332.7
(3)
P 		15
(-2.8)
A 		327
C 3.9
(-3)
A 		5.7
(-3)
A 		53.2
(-2)
A 		263.5
(2.5)
P 		287.3
(3)
P 		9.7
(-2.9)
A 		283
avr 5.4
(-3) 		6.1
(-3) 		76.1
(-1.8) 		358.8
(3) 		293.8
(1.9) 		11.7
(-2.9) 		353
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.7
(-0.7)
A 		0.7
(-3)
A 		1.8
(-2.4)
A 		11.3
(3)
A 		11
B 2.1
(-3)
A 		3.1
(-2.5)
A 		3.9
(-2.2)
A 		15.1
(3)
A 		13
C 3.3
(-2.1)
A 		1.6
(-3)
A 		2.9
(-2.3)
A 		12.5
(3)
A 		11
avr 3.4
(-2.1) 		1.8
(-3) 		2.9
(-2.4) 		13
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.5
(-2.9)
A 		16.8
(-2.3)
A 		126.5
(3)
P 		78.9
(0.7)
P 		2.5
(-2.9)
A 		125
B 2.1
(-3)
A 		1.9
(-3)
A 		23.8
(-2)
A 		83.2
(0.7)
P 		135.2
(3)
P 		5.6
(-2.8)
A 		133
C 1.4
(-3)
A 		1.7
(-3)
A 		13.5
(-2.2)
A 		53
(0.4)
P 		93
(3)
P 		3.3
(-2.9)
A 		92
avr 1.6
(-3) 		2
(-3) 		18
(-2) 		87.6
(2.1) 		102.4
(3) 		3.8
(-2.9) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4483
Sequence Type Exemplar sequence
Representative Public ID T05A8.6 NCBI
Target Description T05A8.6 /REP_DB=WormBase Gene ID /WP=CE18202 /TR=O44855 /GB=AAB95017.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061944 NCBI Caenorhabditis elegans T05A8.6 (T05A8.6) mRNA, complete cds. 11/11 None
GENEFINDER00000017333 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2738589:2739642:-1 11/11 None
T05A8.6 ENSEMBL cdna:known chromosome:CEL140:II:2738671:2739642:-1 gene:T05A8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2738669-2739641(-) 92.42 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A8.6
Entrez Gene 188091 Entrez gene
SwissProt O44855 EMBL-EBI
WormBase CE18202 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494345 T05A8.6 [Caenorhabditis elegans] gb|AAB95017.1| Hypothetical protein T05A8.6 [Caenorhabditis elegans] 3.0E-84
blast NP_494345 T05A8.6 [Caenorhabditis elegans] gb|AAB95017.1| Hypothetical protein T05A8.6 [Caenorhabditis elegans] 7.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 9.9E-8
Sequence
Target Sequence 
>C. ELEGANS:181983_AT
tattgcacttgccatttgcccaaaccaattgaattcatgcatcccgattttgccagaccc
attagctaccaaaattgtaaagcttccaactacaccgaaaagtgctcaaatggacgcatt
tctttatgaaacttctcaaaagaaatgcacaacttgtggaacaacgactaaaccagtgcg
cgtgaagccagtgctaactacaactccgggagcaacaactgtgaccaccaccacagctcc
aactacaaccaaggctccggattgcacgaccaccacagctccaactacaaccaaggctcc
ggattgcacgacctgctcacaagacattcttaccgatccgatgctcgctaacgtccattg
tgcctcaactggaagtacggtaaatggttgtgctactctccagatattttgtgaaaatat
gggttgcgagacggctgagctttatgtaagttttgagaaaatgctcgaatttcttataaa
agccttcagattagaagtgaatcaggcgttgttaccaggacgggcagtagtactggtaac
gaaaccgatactgaattgcgctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGCACTTGCCATTTGCCCAAAC 261 663 33 Antisense
TTCATGCATCCCGATTTTGCCAGAC 691 687 66 Antisense
TTGCCAGACCCATTAGCTACCAAAA 22 701 82 Antisense
GAAGCCAGTGCTAACTACAACTCCG 212 345 216 Antisense
TCCGGGAGCAACAACTGTGACCACC 498 593 237 Antisense
AAGACATTCTTACCGATCCGATGCT 24 153 353 Antisense
TAACGTCCATTGTGCCTCAACTGGA 387 635 381 Antisense
AATGGTTGTGCTACTCTCCAGATAT 349 163 415 Antisense
TGGGTTGCGAGACGGCTGAGCTTTA 653 551 452 Antisense
TCAGGCGTTGTTACCAGGACGGGCA 428 621 534 Antisense
AAACCGATACTGAATTGCGCTGCCA 5 127 574 Antisense
Sequence Source Affymetrix Proprietary Database