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[181982_s_at]

Description B0212.3 /REP_DB=WormBase Gene ID /WP=CE16769 /TR=O45063 /GB=AAC02565.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 40      6grp_total > 51      4grp_total > 63      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 270.9
(2.3)
A 		212.9
(-1.7)
A 		281.9
(3)
A 		193.9
(-3)
A 		88
B 271.9
(3)
A 		177.8
(-3)
A 		222
(-0.2)
A 		229.2
(0.3)
A 		94
C 305.9
(3)
A 		270.2
(-2.3)
A 		265.2
(-3)
A 		281
(-0.7)
A 		41
avr 282.9
(3) 		220.3
(-3) 		256.4
(0.5) 		234.7
(-1.6) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 370.1
(-0.5)
A 		314.7
(-2.7)
A 		456
(3)
P 		446.3
(2.6)
P 		323
(-2.4)
P 		308.4
(-3)
M 		148
B 379
(0.4)
P 		307
(-3)
P 		433.6
(3)
P 		404.1
(1.6)
P 		334.4
(-1.7)
P 		342.5
(-1.3)
P 		127
C 296.2
(-2)
M 		340.3
(-0.9)
M 		496.3
(3)
P 		455.6
(2)
P 		257.7
(-3)
M 		338.2
(-1)
M 		239
avr 348.4
(-1.3) 		320.7
(-2.4) 		462
(3) 		435.3
(2) 		305
(-3) 		329.7
(-2.1) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 98.6
(3)
A 		46.2
(-1.5)
A 		73.7
(0.9)
A 		28.4
(-3)
A 		70
B 86.7
(3)
A 		43.9
(-3)
A 		51.4
(-1.9)
A 		48.8
(-2.3)
A 		43
C 101.3
(3)
A 		77.7
(0.4)
A 		92.4
(2)
A 		47.4
(-3)
A 		54
avr 95.5
(3) 		55.9
(-1.4) 		72.5
(0.4) 		41.5
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 68.2
(-3)
A 		111.9
(2.8)
A 		99.3
(1.1)
P 		113.2
(3)
P 		97.5
(0.9)
P 		75.1
(-2.1)
M 		45
B 131.9
(2.3)
P 		102.2
(-3)
P 		105.3
(-2.4)
P 		107
(-2.1)
P 		135.9
(3)
P 		127.7
(1.5)
P 		34
C 109.8
(0.7)
M 		103.8
(-0.1)
M 		126.3
(3)
P 		91.6
(-1.9)
P 		83.4
(-3)
M 		113.2
(1.2)
M 		43
avr 103.3
(-3) 		106
(-0.7) 		110.3
(3) 		103.9
(-2.5) 		105.6
(-1) 		105.3
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181982_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11045
Sequence Type Exemplar sequence
Representative Public ID B0212.3 NCBI
Target Description B0212.3 /REP_DB=WormBase Gene ID /WP=CE16769 /TR=O45063 /GB=AAC02565.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067967(11), NM_067968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067967 NCBI Caenorhabditis elegans M57.1 (M57.1) mRNA, complete cds. 11/11 A 
NM_067968 NCBI Caenorhabditis elegans B0212.3 (B0212.3) mRNA, complete cds. 11/11 A 
SNAP00000011891 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3533648:3539000:1 11/11 None
GENEFINDER00000011894 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3533648:3539000:1 11/11 None
GENEFINDER00000040985 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3540184:3543527:1 11/11 None
M57.1 ENSEMBL cdna:known chromosome:CEL140:IV:3533637:3539042:1 gene:M57.1 11/11 A 
B0212.3 ENSEMBL cdna:known chromosome:CEL140:IV:3540184:3543532:1 gene:B0212.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040977 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3540189-3543533(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl M57.1
B0212.3
Entrez Gene 177114 Entrez gene
177115 Entrez gene
SwissProt O45063 EMBL-EBI
Q9TYX9 EMBL-EBI
WormBase CE16769 Wormbase
CE19540 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68984 Hypothetical protein M57.1 [Caenorhabditis elegans] ref|NP_500368.1| M57.1 [Caenorhabditis elegans] 0.0
blast AAC02565 Hypothetical protein B0212.3 [Caenorhabditis elegans] ref|NP_500369.1| B0212.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 4.0E-57
Pfam IPR006570 EMBL-EBI SPK 3.9E-63
Pfam IPR006570 EMBL-EBI SPK 1.9E-62
Pfam IPR006570 EMBL-EBI SPK 7.5E-60
Pfam IPR006570 EMBL-EBI SPK 1.3E-60
Pfam IPR006570 EMBL-EBI SPK 3.0E-63
Pfam IPR006570 EMBL-EBI SPK 2.2E-16
Pfam IPR006570 EMBL-EBI SPK 1.9E-10
Pfam IPR006570 EMBL-EBI SPK 2.4E-39
Pfam IPR006570 EMBL-EBI SPK 1.3E-60
Pfam IPR006570 EMBL-EBI SPK 3.0E-63
Sequence
Target Sequence 
>C. ELEGANS:181982_S_AT
tagaactcattcttacttctctcgaatcagatactctagatgatttgttaaacgatattg
aagggattcgtgttcgaataaatgatgagattcttccaccagagctagtgatcactgcct
tgcagacgttcttattgggaatcactcgcaagtctcgatccgcagcgtcagcagaaaaca
aatcatcacacgagtgtctgagaatcttcaaatattcattgccttggctcagaagccctt
tgctttgggagctacaacagagggttgaggaagaaattgaaagtcacgttatcggaggga
agattatcctagtcgccgatgttcagcaaggtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAACTCATTCTTACTTCTCTCGA 280 653 1667 Antisense
ATTCTTCCACCAGAGCTAGTGATCA 562 11 1756 Antisense
GAGCTAGTGATCACTGCCTTGCAGA 159 389 1768 Antisense
CACTGCCTTGCAGACGTTCTTATTG 432 197 1779 Antisense
GACGTTCTTATTGGGAATCACTCGC 361 377 1791 Antisense
TGGGAATCACTCGCAAGTCTCGATC 131 555 1802 Antisense
TCTCGATCCGCAGCGTCAGCAGAAA 610 611 1819 Antisense
AAACAAATCATCACACGAGTGTCTG 58 129 1842 Antisense
GCTCAGAAGCCCTTTGCTTTGGGAG 444 301 1893 Antisense
AAGATTATCCTAGTCGCCGATGTTC 663 155 1966 Antisense
AGTCGCCGATGTTCAGCAAGGTATT 544 59 1977 Antisense
Sequence Source Affymetrix Proprietary Database