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[181980_at]

Description ZK973.8 /REP_DB=WormBase Gene ID /WP=CE24754 /TR=Q9N4M1 /GB=AAF40012.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 55      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 119.5
(3)
A 		99.8
(0.3)
A 		103.3
(0.8)
A 		76
(-3)
A 		44
B 127.5
(3)
A 		77.6
(0)
A 		27.2
(-3)
A 		41.4
(-2.2)
A 		100
C 55.3
(-1.8)
A 		42.9
(-3)
A 		103.8
(3)
A 		99.1
(2.5)
A 		61
avr 100.8
(3) 		73.4
(-2.7) 		78.1
(-1.8) 		72.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 23.9
(-3)
A 		122.9
(0.9)
A 		55.9
(-1.8)
A 		172.7
(2.8)
A 		134.6
(1.3)
A 		177.8
(3)
A 		154
B 53.8
(-1.9)
A 		29.3
(-3)
A 		91.7
(-0.2)
A 		132
(1.6)
A 		164.4
(3)
A 		152.1
(2.5)
P 		135
C 54.7
(-3)
A 		63.6
(-2.6)
A 		99.9
(-1)
A 		149.4
(1.1)
A 		186.3
(2.7)
A 		193.4
(3)
A 		139
avr 44.1
(-3) 		71.9
(-1.7) 		82.5
(-1.2) 		151.4
(1.9) 		161.8
(2.4) 		174.4
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 43.5
(3)
A 		21.7
(-1)
A 		27
(-0.1)
A 		11.1
(-3)
A 		32
B 40.7
(3)
A 		19.2
(-0.8)
A 		6.3
(-3)
A 		8.8
(-2.6)
A 		34
C 18.3
(-1.5)
A 		12.3
(-3)
A 		36.2
(3)
A 		16.7
(-1.9)
A 		24
avr 34.2
(3) 		17.7
(-1.5) 		23.2
(0) 		12.2
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 4.4
(-3)
A 		43.7
(3)
A 		12.2
(-1.8)
A 		43.8
(3)
A 		40.6
(2.5)
A 		43.3
(2.9)
A 		39
B 18.7
(-2.1)
A 		9.8
(-3)
A 		22.3
(-1.7)
A 		35
(-0.3)
A 		66.8
(3)
A 		56.7
(1.9)
P 		57
C 20.3
(-2.9)
A 		19.4
(-3)
A 		25.4
(-2.2)
A 		30
(-1.6)
A 		60.3
(2.4)
A 		64.8
(3)
A 		45
avr 14.5
(-3) 		24.3
(-1.6) 		20
(-2.2) 		36.3
(0.2) 		55.9
(3) 		54.9
(2.9) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2478
Sequence Type Exemplar sequence
Representative Public ID ZK973.8 NCBI
Target Description ZK973.8 /REP_DB=WormBase Gene ID /WP=CE24754 /TR=Q9N4M1 /GB=AAF40012.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058955 NCBI Caenorhabditis elegans ZK973.8 (ZK973.8) mRNA, complete cds. 11/11 None
SNAP00000023509 ENSEMBL cdna:SNAP chromosome:CEL140:I:4364952:4370088:-1 9/11 None
GENEFINDER00000023524 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4364952:4366814:-1 11/11 None
ZK973.8 ENSEMBL cdna:known chromosome:CEL140:I:4364952:4366950:-1 gene:ZK973.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4364951-4366950(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK973.8
Entrez Gene 191480 Entrez gene
SwissProt Q9N4M1 EMBL-EBI
WormBase CE24754 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF40012 Hypothetical protein ZK973.8 [Caenorhabditis elegans] ref|NP_491356.1| ZK973.8 [Caenorhabditis elegans] 0.0
blast CAE60488 Hypothetical protein CBG04102 [Caenorhabditis briggsae] 1.0E-125
blast CAE60488 Hypothetical protein CBG04102 [Caenorhabditis briggsae] 1.0E-123
blast CAE60488 Hypothetical protein CBG04102 [Caenorhabditis briggsae] 1.0E-118
blast CAA94570 Hypothetical protein C25G4.7 [Caenorhabditis elegans] ref|NP_502381.1| C25G4.7 [Caenorhabditis elegans] 2.0E-51
blast CAA94570 Hypothetical protein C25G4.7 [Caenorhabditis elegans] ref|NP_502381.1| C25G4.7 [Caenorhabditis elegans] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 1.1E-28
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 1.1E-28
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 1.1E-28
Sequence
Target Sequence 
>C. ELEGANS:181980_AT
tcaaaaaacccacaacttccttctgaccaccacaacccaattggaattcccatgcaataa
ggaaggtctctacgtggcttctccctacttccgcaaaaacctgacgagcactatgacaag
tttcccactggacgtgcaatacttggaagcgattgaagtggttatcagctggatgttcac
ggaaagctaccatccaccaacaaagctcactccaaaattggctgaagaaattgtgaagtt
gtcggagaggattgtgccacctggacccaataggaagcagctcgccgggtcgattgagag
gcactgctttgaggaactgattctgaattgtgaggatatggcgtatgtgaaggagctgat
gcttatggctcacaccaaccggcttgatagccttcacgaagcctgtaacgccacaatcat
atcgtttcacttcgcggatttttgccgggatatgaaacagaatccagaccctgccttcac
tcagcatcaaatgcaccgttccagtgttatgagtcgtctctatgacaattatgggaagag
tctctgcgtgcatagcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAAAACCCACAACTTCCTTCTG 689 627 591 Antisense
TCCCTACTTCCGCAAAAACCTGACG 358 587 672 Antisense
AGTTTCCCACTGGACGTGCAATACT 702 59 709 Antisense
TTGTGCCACCTGGACCCAATAGGAA 323 709 842 Antisense
CAGCTCGCCGGGTCGATTGAGAGGC 709 203 868 Antisense
CTCACACCAACCGGCTTGATAGCCT 316 227 959 Antisense
TAGCCTTCACGAAGCCTGTAACGCC 265 651 978 Antisense
TCGTTTCACTTCGCGGATTTTTGCC 171 603 1012 Antisense
CCTGCCTTCACTCAGCATCAAATGC 283 267 1060 Antisense
GTTCCAGTGTTATGAGTCGTCTCTA 220 441 1088 Antisense
AGAGTCTCTGCGTGCATAGCTTCAT 611 67 1127 Antisense
Sequence Source Affymetrix Proprietary Database