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[181979_at]

Description C47D12.2 /REP_DB=WormBase Gene ID /WP=CE20567 /TR=Q18668 /GB=CAA93767.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 65      6grp_total > 74      4grp_total > 52      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 1074.8
(2.5)
P 		1094.9
(3)
P 		977.8
(0.3)
P 		830.5
(-3)
P 		264
B 916.3
(0.5)
P 		1013.8
(3)
P 		879.4
(-0.5)
P 		782.9
(-3)
P 		231
C 955
(3)
P 		894
(0.6)
P 		851.8
(-1.1)
P 		802.9
(-3)
P 		152
avr 982
(2.4) 		1000.9
(3) 		903
(-0) 		805.4
(-3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 741
1 2 3 4 5 6 range
A 1014.3
(-2.1)
P 		1077.4
(-1.5)
P 		929.7
(-3)
P 		1522.6
(3)
P 		1119.5
(-1.1)
P 		1495
(2.7)
P 		593
B 912.3
(-1.4)
P 		781.3
(-3)
P 		1254.4
(2.9)
P 		1192.4
(2.2)
P 		897.7
(-1.5)
P 		1258.5
(3)
P 		477
C 937.2
(-2)
P 		820.9
(-3)
P 		1509
(3)
P 		1332.5
(1.5)
P 		1031.1
(-1.2)
P 		1337.3
(1.5)
P 		688
avr 954.6
(-2.2) 		893.2
(-3) 		1231
(1.3) 		1349.2
(2.8) 		1016.1
(-1.4) 		1363.6
(3) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 391.3
(3)
P 		237.7
(-0.4)
P 		255.6
(-0)
P 		121.6
(-3)
P 		270
B 292.2
(3)
P 		250.4
(1)
P 		203.8
(-1.2)
P 		166.8
(-3)
P 		125
C 316.1
(3)
P 		257
(1)
P 		296.9
(2.4)
P 		135.4
(-3)
P 		181
avr 333.2
(3) 		248.4
(0.3) 		252.1
(0.5) 		141.3
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 187
(-3)
P 		383.2
(2.9)
P 		202.5
(-2.5)
P 		386.2
(3)
P 		337.8
(1.5)
P 		364
(2.3)
P 		199
B 317.4
(-1.4)
P 		260.1
(-3)
P 		304.6
(-1.7)
P 		315.8
(-1.4)
P 		364.7
(-0)
P 		469.3
(3)
P 		209
C 347.4
(-0.1)
P 		250.5
(-3)
P 		384.1
(1.1)
P 		268
(-2.5)
P 		333.7
(-0.5)
P 		447.7
(3)
P 		197
avr 283.9
(-3) 		297.9
(-2.4) 		297.1
(-2.4) 		323.3
(-1.3) 		345.4
(-0.4) 		427
(3) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3545
Sequence Type Exemplar sequence
Representative Public ID C47D12.2 NCBI
Target Description C47D12.2 /REP_DB=WormBase Gene ID /WP=CE20567 /TR=Q18668 /GB=CAA93767.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064091 NCBI Caenorhabditis elegans C47D12.2 (C47D12.2) mRNA, complete cds. 11/11 None
SNAP00000023903 ENSEMBL cdna:SNAP chromosome:CEL140:II:11676215:11678967:1 11/11 None
GENEFINDER00000023920 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11676215:11678956:1 11/11 None
C47D12.2.1 ENSEMBL cdna:known chromosome:CEL140:II:11676210:11679091:1 gene:C47D12.2 11/11 None
C47D12.2.2 ENSEMBL cdna:known chromosome:CEL140:II:11676211:11679091:1 gene:C47D12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11676211-11678964(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47D12.2
Entrez Gene 174789 Entrez gene
SwissProt Q18668 EMBL-EBI
WormBase CE20567 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264321_AT expressed protein at
CANINE:1599713_AT similar to dymeclin cfa
CANINE:1592275_AT similar to dymeclin cfa
CANINE_2:CFA.17618.1.S1_S_AT similar to dymeclin cfa
CANINE_2:CFA.20472.1.S1_S_AT similar to dymeclin cfa
CANINE_2:CFAAFFX.29109.1.S1_S_AT similar to dymeclin cfa
DROSOPHILA_2:1625814_AT dm
DROSGENOME1:151861_AT dm
HG-U133B:223171_AT dymeclin hs
HG-U133_PLUS_2:223171_AT dymeclin hs
HG-U133_PLUS_2:220774_AT dymeclin hs
HG-U133A_2:220774_AT dymeclin hs
HG-U133A:220774_AT dymeclin hs
U133_X3P:G8923078_3P_AT dymeclin hs
U133_X3P:G12654818_3P_AT dymeclin hs
HG-U95E:78504_AT dymeclin hs
HG-U133_PLUS_2:227730_AT Dymeclin hs
HG-U133B:227730_AT Dymeclin hs
U133_X3P:HS.287465.0.S1_3P_AT Dymeclin hs
U133_X3P:HS.116976.0.A1_3P_AT Dymeclin hs
HG-U133_PLUS_2:234043_AT Dymeclin hs
HG-U133B:234043_AT Dymeclin hs
HG-U95E:88604_AT Dymeclin hs
HG-U133_PLUS_2:233838_AT Dymeclin hs
HG-U133B:233838_AT Dymeclin hs
HG-U95C:63145_AT Dymeclin hs
HG-U95E:72633_R_AT Dymeclin hs
HG-U95D:89271_AT Dymeclin hs
HU35KSUBD:RC_H38159_AT Dymeclin hs
MU11KSUBA:AA269960_S_AT dymeclin mm
MG-U74AV2:99988_AT dymeclin mm
MOE430A:1437141_X_AT dymeclin mm
MOUSE430A_2:1437141_X_AT dymeclin mm
MOUSE430_2:1437141_X_AT dymeclin mm
MOE430A:1423736_A_AT dymeclin mm
MOUSE430A_2:1423736_A_AT dymeclin mm
MOUSE430_2:1423736_A_AT dymeclin mm
MOE430B:1430532_AT dymeclin mm
MOUSE430_2:1430532_AT dymeclin mm
MOE430B:1441008_AT dymeclin mm
MOUSE430_2:1441008_AT dymeclin mm
MOE430B:1444313_AT Dymeclin, mRNA (cDNA clone MGC:47038 IMAGE:4458792) mm
MOUSE430_2:1444313_AT Dymeclin, mRNA (cDNA clone MGC:47038 IMAGE:4458792) mm
MU19KSUBA:TC24019_AT Dymeclin, mRNA (cDNA clone MGC:47038 IMAGE:4458792) mm
MU19KSUBC:TC38971_AT Dymeclin, mRNA (cDNA clone MGC:47038 IMAGE:4458792) mm
RG-U34C:RC_AI233869_AT similar to RIKEN cDNA 4933427L07 (predicted) rn
RG-U34C:RC_AI171091_AT Similar to RIKEN cDNA 4933427L07 (predicted) rn
RAE230A:1373502_AT Similar to RIKEN cDNA 4933427L07 (predicted) rn
RAT230_2:1373502_AT Similar to RIKEN cDNA 4933427L07 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA93767 Hypothetical protein C47D12.2 [Caenorhabditis elegans] ref|NP_496492.1| C47D12.2 [Caenorhabditis elegans] 0.0
blast CAE59455 Hypothetical protein CBG02834 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181979_AT
cacaaactgcttagctgctcttgcaaacatgtcagctttcttcaaaaatcttgctccaat
tgtttgccaaagactcatatcactgcttgatcttctaacaaaacggcatgctaaaatggt
ggatcatatgagagtcagcagtcagaatgatgttgcagatggacagccgatcaatttcca
tgacgacattactgctctcgaagaaggaattcgaactctccttgagatcatcaacagtgc
actttgtggaggactccgtcacaattcacacctcatctacaaccttctctaccatcgtgc
tctattcgatgcatacgttcagcacccaatgttccaagatcttcttgttaacatcgcagc
agtaatctctcacttctcgtcgaaagtgatacatgtcccagcaggcgatggatccacaat
gctgcaaataatcgagaaggaggcaaacatatggccaaccgatcgactcgcaaagttccc
agaattgaagttccgatacgtggaggatgagtacactgtcgatttctttgtgccatacgt
ctggaggctatctgttcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAAACTGCTTAGCTGCTCTTGCA 252 195 1461 Antisense
AAATCTTGCTCCAATTGTTTGCCAA 384 117 1506 Antisense
TCCATGACGACATTACTGCTCTCGA 228 591 1637 Antisense
TGGAGGACTCCGTCACAATTCACAC 20 551 1707 Antisense
TTCGATGCATACGTTCAGCACCCAA 277 695 1765 Antisense
AGCACCCAATGTTCCAAGATCTTCT 352 77 1781 Antisense
CATCGCAGCAGTAATCTCTCACTTC 649 211 1812 Antisense
GATACATGTCCCAGCAGGCGATGGA 261 423 1848 Antisense
GCCAACCGATCGACTCGCAAAGTTC 142 279 1914 Antisense
CGATTTCTTTGTGCCATACGTCTGG 177 249 1980 Antisense
ACGTCTGGAGGCTATCTGTTCAACA 509 95 1997 Antisense
Sequence Source Affymetrix Proprietary Database