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[181978_at]

Description F10E7.1 /REP_DB=WormBase Gene ID /WP=CE04356 /TR=Q19309 /GB=AAA82431.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 01      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 0.6
(-3)
A 		6.3
(-2.4)
A 		6.1
(-2.4)
A 		58.5
(3)
A 		58
B 7.5
(-0.7)
A 		3.4
(-2.8)
A 		14.8
(3)
A 		3
(-3)
A 		12
C 9.4
(-1.7)
A 		2.4
(-3)
A 		10.1
(-1.6)
A 		35.7
(3)
A 		33
avr 5.8
(-2.6) 		4
(-3) 		10.3
(-1.7) 		32.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 24
(0.7)
A 		1
(-3)
A 		2
(-2.8)
A 		1.9
(-2.9)
A 		3
(-2.7)
A 		38.7
(3)
A 		38
B 12.5
(-0.7)
A 		3
(-2.7)
A 		1.8
(-3)
A 		2
(-3)
A 		16.8
(0.3)
A 		29.4
(3)
A 		28
C 13
(3)
A 		7.6
(-0)
A 		2.2
(-3)
A 		11.8
(2.3)
A 		4.4
(-1.8)
A 		3.3
(-2.4)
A 		11
avr 16.5
(1) 		3.9
(-2.5) 		2
(-3) 		5.2
(-2.1) 		8.1
(-1.3) 		23.8
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.2
(-3)
A 		1.4
(-2.1)
A 		1.6
(-2)
A 		8.6
(3)
A 		8
B 2.4
(0.9)
A 		0.8
(-2.6)
A 		3.4
(3)
A 		0.6
(-3)
A 		3
C 3.1
(-0.3)
A 		0.7
(-3)
A 		3.5
(0.2)
A 		6
(3)
A 		5
avr 1.9
(-1.7) 		1
(-3) 		2.8
(-0.4) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.4
(-0.3)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		0.5
(-2.9)
A 		0.9
(-2.6)
A 		9.4
(3)
A 		9
B 4.4
(-0.7)
A 		1
(-2.7)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		6.8
(0.6)
A 		11
(3)
A 		11
C 4.8
(3)
A 		2.3
(-0.6)
A 		0.6
(-3)
A 		2.4
(-0.4)
A 		1.4
(-1.9)
A 		1.1
(-2.3)
A 		4
avr 4.5
(0.6) 		1.2
(-2.4) 		0.5
(-3) 		1.1
(-2.5) 		3
(-0.8) 		7.2
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4372
Sequence Type Exemplar sequence
Representative Public ID F10E7.1 NCBI
Target Description F10E7.1 /REP_DB=WormBase Gene ID /WP=CE04356 /TR=Q19309 /GB=AAA82431.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063076 NCBI Caenorhabditis elegans F10E7.1 (F10E7.1) mRNA, complete cds. 11/11 None
SNAP00000013176 ENSEMBL cdna:SNAP chromosome:CEL140:II:7128005:7128856:1 11/11 None
GENEFINDER00000013184 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7127972:7128856:1 11/11 None
F10E7.1 ENSEMBL cdna:known chromosome:CEL140:II:7126687:7128773:1 gene:F10E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7126682-7128769(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E7.1
Entrez Gene 174172 Entrez gene
SwissProt Q19309 EMBL-EBI
WormBase CE04356 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82431 Hypothetical protein F10E7.1 [Caenorhabditis elegans] ref|NP_495477.1| F10E7.1 [Caenorhabditis elegans] 0.0
blast AAA82431 Hypothetical protein F10E7.1 [Caenorhabditis elegans] ref|NP_495477.1| F10E7.1 [Caenorhabditis elegans] 1.0E-125
blast AAA82431 Hypothetical protein F10E7.1 [Caenorhabditis elegans] ref|NP_495477.1| F10E7.1 [Caenorhabditis elegans] 1.0E-118
blast CAB04449 Hypothetical protein F53A2.1 [Caenorhabditis elegans] ref|NP_499746.1| F53A2.1 [Caenorhabditis elegans] 2.0E-36
blast CAB07545 Hypothetical protein BE10.3 [Caenorhabditis elegans] ref|NP_499665.1| BE10.3 [Caenorhabditis elegans] 3.0E-36
blast CAB07545 Hypothetical protein BE10.3 [Caenorhabditis elegans] ref|NP_499665.1| BE10.3 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 1.0E-120
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 1.1E-126
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181978_AT
ttggtgatccaatctcaactcatccaatttctaaaaattcattggagaaagtggaactag
atctacgctttggtgttaatactttggttaaaatgtttcatagaagtgctgaaatattac
caacggataatatcattgaaaatgtccgaagaatttttccaaccaagaacatgattataa
ctcttccaaatagtttctcaccacttccagtcgagcatcattgccgttttgttatgatgt
ttttgagaatgggatttccgaagggacaaagaaatttcaatgtcacatggagattgttta
ttcacgaaccgatttatggaacatcaccaggatttaaatatagaaatatggtgattccag
cattcaactacaagccaaagccaaaactgtcaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTGATCCAATCTCAACTCATCC 27 709 1046 Antisense
GGAACTAGATCTACGCTTTGGTGTT 619 529 1098 Antisense
GAAGTGCTGAAATATTACCAACGGA 338 335 1148 Antisense
GAACATGATTATAACTCTTCCAAAT 528 351 1212 Antisense
TTCCAAATAGTTTCTCACCACTTCC 446 701 1229 Antisense
TTCCAGTCGAGCATCATTGCCGTTT 619 697 1250 Antisense
ATTGCCGTTTTGTTATGATGTTTTT 242 7 1265 Antisense
GGAGATTGTTTATTCACGAACCGAT 276 517 1334 Antisense
ACGAACCGATTTATGGAACATCACC 594 89 1349 Antisense
GATTCCAGCATTCAACTACAAGCCA 107 433 1398 Antisense
AAGCCAAAGCCAAAACTGTCAAGTT 247 149 1417 Antisense
Sequence Source Affymetrix Proprietary Database