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[181976_at]

Description Y76A2A.1 /REP_DB=WormBase Gene ID /WP=CE19270 /TR=Q9XWB4 /GB=CAA21771.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 56      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 4.1
(-3)
A 		5
(-2.9)
A 		73.1
(3)
A 		6
(-2.8)
A 		69
B 2.8
(-3)
A 		53
(0.8)
A 		82.4
(3)
A 		3.8
(-2.9)
A 		80
C 4.4
(-3)
A 		57.4
(3)
A 		39.8
(1)
A 		11.9
(-2.2)
A 		53
avr 3.8
(-3) 		38.5
(0.4) 		65.1
(3) 		7.2
(-2.7) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 6.3
(-3)
A 		39.4
(-2.1)
A 		96.7
(-0.5)
A 		199.3
(2.3)
P 		225.3
(3)
P 		168
(1.4)
A 		219
B 2.7
(-3)
A 		34.1
(-2.4)
A 		72.5
(-1.6)
A 		149
(-0.1)
M 		307.9
(3)
P 		119.7
(-0.7)
A 		305
C 4.2
(-3)
A 		63.4
(-1.8)
A 		82.2
(-1.4)
A 		261
(2.3)
P 		293.9
(3)
P 		143.7
(-0.1)
A 		290
avr 4.4
(-3) 		45.6
(-2.1) 		83.8
(-1.2) 		203.1
(1.4) 		275.7
(3) 		143.8
(0.1) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.5
(-2.8)
A 		1.1
(-2.9)
A 		19.1
(3)
A 		0.9
(-3)
A 		18
B 0.9
(-3)
A 		13.1
(1)
A 		19.1
(3)
A 		0.8
(-3)
A 		18
C 1.4
(-3)
A 		16.5
(3)
A 		13.9
(2)
A 		2
(-2.8)
A 		15
avr 1.3
(-3) 		10.2
(0.3) 		17.4
(3) 		1.2
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 1.2
(-3)
A 		14
(-1.9)
A 		21.1
(-1.2)
A 		50.6
(1.4)
P 		68
(3)
P 		40.9
(0.6)
A 		67
B 0.9
(-3)
A 		11.3
(-2.5)
A 		17.6
(-2.2)
A 		39.5
(-1.1)
M 		125.1
(3)
P 		44.6
(-0.9)
A 		124
C 1.5
(-3)
A 		19.3
(-1.9)
A 		20.9
(-1.8)
A 		52.5
(0.3)
P 		95.1
(3)
P 		48.1
(-0)
A 		94
avr 1.2
(-3) 		14.9
(-2.1) 		19.9
(-1.8) 		47.5
(-0.1) 		96.1
(3) 		44.5
(-0.3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181976_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6335
Sequence Type Exemplar sequence
Representative Public ID Y76A2A.1 NCBI
Target Description Y76A2A.1 /REP_DB=WormBase Gene ID /WP=CE19270 /TR=Q9XWB4 /GB=CAA21771.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067379 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-164) (tag-164) mRNA, complete cds. 11/11 None
SNAP00000025200 ENSEMBL cdna:SNAP chromosome:CEL140:III:13459098:13460124:1 11/11 None
GENEFINDER00000025207 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13459098:13460124:1 11/11 None
Y76A2A.1 ENSEMBL cdna:known chromosome:CEL140:III:13459098:13460124:1 gene:Y76A2A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13459093-13460120(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-164
Ensembl Y76A2A.1
Entrez Gene 190727 Entrez gene
SwissProt Q9XWB4 EMBL-EBI
WormBase CE19270 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21771 Hypothetical protein Y76A2A.1 [Caenorhabditis elegans] ref|NP_499780.1| Temporarily Assigned Gene name family member (tag-164) [Caenorhabditis elegans] 1.0E-130
blast CAA21771 Hypothetical protein Y76A2A.1 [Caenorhabditis elegans] ref|NP_499780.1| Temporarily Assigned Gene name family member (tag-164) [Caenorhabditis elegans] 1.0E-128
blast CAE73688 Hypothetical protein CBG21199 [Caenorhabditis briggsae] 5.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499780.1 1 275-292
Y76A2A.1 1 275-292
SNAP00000025200 1 259-276
GENEFINDER00000025207 1 275-292
Sequence
Target Sequence 
>C. ELEGANS:181976_AT
gccacactgctgacatttcaagccattcgaaataaaggcgatcaagctcgtgttcaactc
cttctctgcaacatttctgaccgtgacatattcgtcaagctccgttgcagcgcggcgtca
aacatcacagctcttccagcaggatcaggacacattgcaccgaaatcccaaatgcgcatt
cttctcacttggcagaagccagatggtgtcactcagtggagcgaacttggtacgcctaag
cttctgctgacaacttatttcatgcatcaaggaatgaaagcggctgatgaggcaccaact
aacacgcgtctaatggctcgtgtgagcacctcgaagcagtgcgatgctgatgctccacca
attgagcaacttcttcttgatgctgtcggcaaagatttgggtgttactccagcttcaaca
accagtccaaacactgctgttacacaggctatgacaccgactgagcaaacaccagcgatg
aaaactgtgaagcaagatgagcatgccgaggaggaagttgacaatttgagatggattatt
atcgccctggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACACTGCTGACATTTCAAGCCA 347 277 313 Antisense
AGGCGATCAAGCTCGTGTTCAACTC 640 53 348 Antisense
TTCTCTGCAACATTTCTGACCGTGA 638 691 374 Antisense
CGTTGCAGCGCGGCGTCAAACATCA 621 245 415 Antisense
TCAAACATCACAGCTCTTCCAGCAG 527 629 430 Antisense
CGAACTTGGTACGCCTAAGCTTCTG 313 249 534 Antisense
GAAAGCGGCTGATGAGGCACCAACT 387 359 588 Antisense
TGGCTCGTGTGAGCACCTCGAAGCA 461 543 626 Antisense
GCAACTTCTTCTTGATGCTGTCGGC 644 319 678 Antisense
GATTTGGGTGTTACTCCAGCTTCAA 656 427 706 Antisense
GAGATGGATTATTATCGCCCTGGTC 560 395 840 Antisense
Sequence Source Affymetrix Proprietary Database