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[181975_at]

Description M01D1.7 /REP_DB=WormBase Gene ID /WP=CE12254 /TR=O17228 /GB=AAB70993.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 59.1
(3)
A 		18.7
(-1.9)
A 		58.7
(3)
A 		9.5
(-3)
A 		50
B 93.2
(3)
A 		61.5
(0.6)
A 		37.4
(-1.2)
M 		13.4
(-3)
A 		80
C 56.2
(-0.4)
A 		58.2
(-0.2)
A 		28.1
(-3)
A 		93.5
(3)
M 		65
avr 69.5
(3) 		46.1
(-1.6) 		41.4
(-2.5) 		38.8
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 44.5
(1.3)
A 		17.7
(-1.5)
A 		30.1
(-0.2)
A 		60.1
(3)
A 		3.8
(-3)
A 		35.2
(0.3)
A 		56
B 39.2
(1.5)
A 		21
(-0.9)
A 		5.8
(-3)
A 		50.1
(3)
A 		44.8
(2.3)
A 		36
(1.1)
A 		44
C 32.1
(-1.4)
A 		59.5
(3)
A 		22.3
(-3)
A 		38.2
(-0.4)
A 		23.6
(-2.8)
A 		53.8
(2.1)
A 		37
avr 38.6
(0.8) 		32.7
(-0.3) 		19.4
(-3) 		49.5
(3) 		24.1
(-2.1) 		41.7
(1.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 21.5
(3)
A 		4.1
(-2.2)
A 		15.3
(1.1)
A 		1.4
(-3)
A 		20
B 29.7
(3)
A 		15.2
(-0.2)
A 		8.7
(-1.7)
M 		2.9
(-3)
A 		27
C 18.6
(3)
A 		16.7
(1.7)
A 		9.8
(-3)
A 		15.8
(1.1)
M 		9
avr 23.3
(3) 		12
(-1.1) 		11.3
(-1.3) 		6.7
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.2
(0)
A 		6.3
(-0.8)
A 		6.5
(-0.7)
A 		15.2
(3)
A 		1.1
(-3)
A 		8.6
(0.2)
A 		14
B 13.6
(1.4)
A 		7
(-1)
A 		1.4
(-3)
A 		13.3
(1.3)
A 		18.2
(3)
A 		13.4
(1.3)
A 		17
C 11.9
(-0)
A 		18.1
(3)
A 		5.7
(-3)
A 		7.7
(-2)
A 		7.6
(-2.1)
A 		18
(3)
A 		12
avr 11.2
(1.6) 		10.5
(1.1) 		4.5
(-3) 		12.1
(2.2) 		9
(0.1) 		13.3
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4485
Sequence Type Exemplar sequence
Representative Public ID M01D1.7 NCBI
Target Description M01D1.7 /REP_DB=WormBase Gene ID /WP=CE12254 /TR=O17228 /GB=AAB70993.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061494(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061494 NCBI Caenorhabditis elegans M01D1.7 (M01D1.7) mRNA, complete cds. 11/11 None
SNAP00000029287 ENSEMBL cdna:SNAP chromosome:CEL140:II:1039703:1040570:-1 11/11 None
GENEFINDER00000029298 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1036557:1040570:-1 9/11 None
M01D1.7 ENSEMBL cdna:known chromosome:CEL140:II:1039703:1040570:-1 gene:M01D1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1039701-1040569(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01D1.7
Entrez Gene 187366 Entrez gene
SwissProt O17228 EMBL-EBI
WormBase CE12254 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70993 Hypothetical protein M01D1.7 [Caenorhabditis elegans] ref|NP_493895.1| M01D1.7 [Caenorhabditis elegans] 1.0E-153
blast AAB70993 Hypothetical protein M01D1.7 [Caenorhabditis elegans] ref|NP_493895.1| M01D1.7 [Caenorhabditis elegans] 1.0E-125
blast AAK31516 Hypothetical protein F36H5.5 [Caenorhabditis elegans] ref|NP_494071.1| F36H5.5 [Caenorhabditis elegans] 5.0E-44
blast AAB95030 Hypothetical protein K05F6.9 [Caenorhabditis elegans] ref|NP_493999.1| K05F6.9 [Caenorhabditis elegans] 4.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-5
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 5.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 11.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 11.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 15.0
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.6E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.0E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 7.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.7E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.8E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.0E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 8.3E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.6E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.7E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.8E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.8E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.7E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.2E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.1E-5
Sequence
Target Sequence 
>C. ELEGANS:181975_AT
agccactcactgttcatttcgagacggcagagcttgtgaacataatgaatatccagacgg
attcacatttgatgcttcacagttcttcgatatgaaaagctgcctgaaacatttactgta
tattctcaacccatcgaaaatcgcttttctgttttatatacaatccaatgaggtttccga
tgaatctcaatttcaaatgaccgtggattgcttaaaaggcgtcaagatcttaaagttttc
tgcaaagtgcattcctcaaatgaatcatattgtccggcttgtcaatgcatttccgcagac
caacaggctcagcctggtgaaaaactcaaatcaaccgtttcagctgtcgactctgcgcca
aattttgcaccggaagatccaaaaacttaacctagtaattgatataacgctgaacgagct
tcttctcaacaactctgcaacttctgacttttacagtgaaaggttaagagggaaggatat
caatttgttcttgaaacactgggcggccggattgaaacctgaacttgaatatatatcctt
ccaaatatcagccgtaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCACTCACTGTTCATTTCGAGAC 683 83 228 Antisense
GATGCTTCACAGTTCTTCGATATGA 543 413 298 Antisense
TTACTGTATATTCTCAACCCATCGA 323 683 340 Antisense
TTGTCCGGCTTGTCAATGCATTTCC 594 707 497 Antisense
ATGCATTTCCGCAGACCAACAGGCT 620 43 512 Antisense
CAAATCAACCGTTTCAGCTGTCGAC 160 193 554 Antisense
GTCGACTCTGCGCCAAATTTTGCAC 579 473 573 Antisense
ATAACGCTGAACGAGCTTCTTCTCA 384 25 631 Antisense
TCAACAACTCTGCAACTTCTGACTT 23 631 653 Antisense
GGCGGCCGGATTGAAACCTGAACTT 20 537 729 Antisense
ATCCTTCCAAATATCAGCCGTAAAC 330 37 762 Antisense
Sequence Source Affymetrix Proprietary Database