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[181971_at]

Description D1007.3 /REP_DB=WormBase Gene ID /WP=CE09038 /TR=O01872 /GB=AAK18910.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 59      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 102.2
(0.8)
A 		101.7
(0.8)
A 		125
(3)
A 		62.6
(-3)
A 		62
B 85.4
(-1.2)
A 		145.4
(3)
A 		115
(0.9)
M 		60.5
(-3)
A 		85
C 96.6
(3)
P 		78.1
(-2.4)
A 		75.9
(-3)
M 		94.2
(2.3)
A 		21
avr 94.7
(0.7) 		108.4
(3) 		105.3
(2.5) 		72.4
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 35.7
(-3)
A 		67.9
(1.2)
A 		73.4
(2)
A 		66.1
(1)
A 		81.2
(3)
A 		80.1
(2.9)
A 		46
B 73.3
(0.1)
A 		84.8
(1.5)
A 		96.5
(3)
A 		67.4
(-0.6)
A 		59.1
(-1.7)
A 		48.4
(-3)
A 		48
C 63.9
(-3)
A 		73
(0.5)
A 		71.9
(0.1)
A 		68.9
(-1.1)
A 		79.4
(3)
M 		64.1
(-2.9)
A 		16
avr 57.6
(-3) 		75.2
(1.6) 		80.6
(3) 		67.5
(-0.4) 		73.2
(1.1) 		64.2
(-1.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 37.2
(3)
A 		22.1
(-0.2)
A 		32.7
(2)
A 		9.2
(-3)
A 		28
B 27.2
(0.7)
A 		35.9
(3)
A 		26.7
(0.6)
M 		12.9
(-3)
A 		23
C 32
(3)
P 		22.5
(-0.5)
A 		26.5
(1)
M 		15.9
(-3)
A 		16
avr 32.1
(3) 		26.8
(1.4) 		28.6
(1.9) 		12.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.6
(-3)
A 		24.1
(2.9)
A 		16
(0.2)
A 		16.8
(0.4)
A 		24.5
(3)
A 		19.5
(1.3)
A 		18
B 25.5
(1.4)
A 		28.2
(3)
A 		23.4
(0.2)
A 		17.8
(-3)
A 		24
(0.6)
A 		18
(-2.9)
A 		10
C 23.7
(2)
A 		22.3
(1.3)
A 		18.3
(-0.8)
A 		13.9
(-3)
A 		25.7
(3)
M 		21.5
(0.9)
A 		12
avr 18.6
(-1.3) 		24.9
(3) 		19.2
(-0.9) 		16.2
(-3) 		24.7
(2.9) 		19.7
(-0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181971_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1358
Sequence Type Exemplar sequence
Representative Public ID D1007.3 NCBI
Target Description D1007.3 /REP_DB=WormBase Gene ID /WP=CE09038 /TR=O01872 /GB=AAK18910.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058994 NCBI Caenorhabditis elegans D1007.3 (D1007.3) mRNA, complete cds. 11/11 None
GENEFINDER00000011300 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4575303:4577201:-1 11/11 None
D1007.3 ENSEMBL cdna:known chromosome:CEL140:I:4575790:4577201:-1 gene:D1007.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011278 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4575789-4577201(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1007.3
Entrez Gene 183886 Entrez gene
SwissProt O01872 EMBL-EBI
WormBase CE09038 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18910 Hypothetical protein D1007.3 [Caenorhabditis elegans] ref|NP_491395.1| D1007.3 [Caenorhabditis elegans] 1.0E-113
blast AAK18910 Hypothetical protein D1007.3 [Caenorhabditis elegans] ref|NP_491395.1| D1007.3 [Caenorhabditis elegans] 1.0E-112
blast CAE74524 Hypothetical protein CBG22278 [Caenorhabditis briggsae] 4.0E-11
blast CAE74524 Hypothetical protein CBG22278 [Caenorhabditis briggsae] 5.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491395.1 1 238-260
D1007.3 1 238-260
GENEFINDER00000011300 1 238-260
Sequence
Target Sequence 
>C. ELEGANS:181971_AT
gtggcaattcgaccatcaaatacccaaccagctcaaactgcgatcgcagaaattccagta
cctctggcgacagataccttgtctgaaattaatgtggatatttttgagaccgctagaact
tccaggacgttttctgatgggaagcttcatccaatgaaagatctaattcgaatgattcga
attgaagagggtctcgacgtgacaccacgacctgatccattaccacttcaagtatccgct
gttcaaccaagttcgtcgactgctgttcaaatgccaacaattcccgaaataccagaaatt
cctgagatcaggaggaaacattcgaaaccacgaaaagcagttttcaatgaggatggggat
ataactacaagaagtatagcaagtcatcccagagagaaccatttgcccgtttatacaata
accaattctcgcaagctatcagcggaaagtattggtgttccagtcgcaacaatcccgcaa
tcacattctcgagctatggtccgttcatctccaatcactcgccaaataaattcagcacct
caaataatcactgcttttgttgcgtttacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCAATTCGACCATCAAATACCC 101 491 181 Antisense
AACCAGCTCAAACTGCGATCGCAGA 541 147 206 Antisense
GAAATTCCAGTACCTCTGGCGACAG 474 363 229 Antisense
AGACCGCTAGAACTTCCAGGACGTT 673 69 287 Antisense
TCCGCTGTTCAACCAAGTTCGTCGA 679 595 415 Antisense
GTTCGTCGACTGCTGTTCAAATGCC 354 443 431 Antisense
GAGAGAACCATTTGCCCGTTTATAC 695 393 572 Antisense
TAACCAATTCTCGCAAGCTATCAGC 105 639 599 Antisense
ATCACATTCTCGAGCTATGGTCCGT 651 27 660 Antisense
ATCTCCAATCACTCGCCAAATAAAT 530 33 687 Antisense
ATCACTGCTTTTGTTGCGTTTACCT 56 29 727 Antisense
Sequence Source Affymetrix Proprietary Database