[Home] | [Total List]

[181970_at]

Description T05C1.2 /REP_DB=WormBase Gene ID /WP=CE02860 /TR=Q22218 /GB=AAA68390.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 95      4grp_total > 12      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 595
1 2 3 4 range
A 377.3
(-0.3)
P 		344.9
(-0.6)
A 		111.6
(-3)
A 		706.3
(3)
P 		595
B 281.3
(-1.4)
M 		220.2
(-2.8)
P 		208.9
(-3)
A 		485.7
(3)
P 		277
C 316.9
(-0.2)
P 		192.3
(-2.2)
A 		137.3
(-3)
A 		526.8
(3)
P 		390
avr 325.2
(-0.5) 		252.5
(-1.6) 		152.6
(-3) 		572.9
(3) 		420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 444
1 2 3 4 5 6 range
A 279.9
(-2.2)
P 		382.3
(0.1)
M 		242.6
(-3)
P 		491.1
(2.5)
P 		513.4
(3)
A 		370.6
(-0.2)
M 		271
B 257.3
(-3)
P 		357.6
(-1.4)
P 		312.3
(-2.1)
P 		280.5
(-2.6)
P 		630.2
(3)
P 		417.6
(-0.4)
P 		373
C 288
(-2.5)
P 		251.2
(-3)
P 		291.2
(-2.4)
P 		434.3
(-0.5)
P 		312.3
(-2.2)
P 		686.5
(3)
P 		435
avr 275.1
(-3) 		330.4
(-1.5) 		282
(-2.8) 		402
(0.5) 		485.3
(2.8) 		491.6
(3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 137.4
(3)
P 		74.9
(-0.5)
A 		29.2
(-3)
A 		103.4
(1.1)
P 		108
B 89.7
(1.5)
M 		54.4
(-2.3)
P 		48.4
(-3)
A 		103.5
(3)
P 		55
C 104.9
(3)
P 		55.3
(-2.2)
A 		47.8
(-3)
A 		88.8
(1.3)
P 		57
avr 110.7
(3) 		61.5
(-1.3) 		41.8
(-3) 		98.6
(1.9) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 51.6
(-3)
P 		136
(1.9)
M 		52.8
(-2.9)
P 		124.5
(1.2)
P 		154.9
(3)
A 		90.2
(-0.8)
M 		103
B 89.5
(-2.5)
P 		119
(-1.5)
P 		75.8
(-3)
P 		74.3
(-3)
P 		256
(3)
P 		155.7
(-0.3)
P 		182
C 106.7
(-1.7)
P 		76.6
(-2.9)
P 		74.1
(-3)
P 		87.3
(-2.5)
P 		101.1
(-2)
P 		229.8
(3)
P 		156
avr 82.6
(-2.1) 		110.5
(-0.5) 		67.6
(-3) 		95.4
(-1.4) 		170.7
(3) 		158.6
(2.3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181970_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5813
Sequence Type Exemplar sequence
Representative Public ID T05C1.2 NCBI
Target Description T05C1.2 /REP_DB=WormBase Gene ID /WP=CE02860 /TR=Q22218 /GB=AAA68390.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062391 NCBI Caenorhabditis elegans T05C1.2 (T05C1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000008485 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4481014:4483711:-1 11/11 None
T05C1.2 ENSEMBL cdna:known chromosome:CEL140:II:4481014:4483711:-1 gene:T05C1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008476 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4481012-4483710(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C1.2
Entrez Gene 188113 Entrez gene
SwissProt Q22218 EMBL-EBI
WormBase CE02860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68390 Hypothetical protein T05C1.2 [Caenorhabditis elegans] ref|NP_494792.1| T05C1.2 [Caenorhabditis elegans] 6.0E-80
blast CAE67885 Hypothetical protein CBG13480 [Caenorhabditis briggsae] 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:181970_AT
gtaaccaggcaggtgctaggcaggcactaaagcagttaggaatgagaaacacaagtaggt
ctgcagcaccgagacgagggtgcgttctctcatgtttttttgagcacttatcgctttacg
atcactcatttttcccccatcattcttctcaaatgttcctttttttgaaggacagtcggt
tccggaaaaaaatggcctcgcaacaagacgcctctccaccaacaggttacaacatgggac
atcgccactcgttaaccattgagaccaatccactgcacttgttgccgtccaatatgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACCAGGCAGGTGCTAGGCAGGC 140 461 26 Antisense
CACAAGTAGGTCTGCAGCACCGAGA 493 193 75 Antisense
CACCGAGACGAGGGTGCGTTCTCTC 95 199 92 Antisense
TCGCTTTACGATCACTCATTTTTCC 54 593 136 Antisense
CCCCCATCATTCTTCTCAAATGTTC 253 261 159 Antisense
AAAATGGCCTCGCAACAAGACGCCT 120 129 214 Antisense
CCTCTCCACCAACAGGTTACAACAT 505 267 236 Antisense
TACAACATGGGACATCGCCACTCGT 615 641 253 Antisense
ACATCGCCACTCGTTAACCATTGAG 76 107 264 Antisense
ACCATTGAGACCAATCCACTGCACT 667 85 280 Antisense
GCACTTGTTGCCGTCCAATATGCGA 202 315 300 Antisense
Sequence Source Affymetrix Proprietary Database