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[181969_at]

Description T23G11.9 /REP_DB=WormBase Gene ID /WP=CE16460 /TR=O45812 /GB=CAB03419.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 76      6grp_highest_nonorm > 91      6grp_total > 66      4grp_total > 21      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 175.5
(0.7)
P 		128.8
(-1.1)
A 		80.3
(-3)
P 		236.4
(3)
P 		156
B 158.2
(0.5)
P 		152.1
(0.2)
A 		72.3
(-3)
A 		220.8
(3)
P 		149
C 213.8
(2.7)
P 		118.2
(-3)
M 		145.8
(-1.3)
P 		218.4
(3)
P 		100
avr 182.5
(1) 		133
(-1.4) 		99.5
(-3) 		225.2
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 145
(-3)
P 		307.5
(0.4)
P 		157.1
(-2.7)
P 		192.4
(-2)
P 		202.1
(-1.8)
P 		430.3
(3)
P 		285
B 147.3
(-3)
P 		296.9
(3)
P 		181.1
(-1.6)
P 		181
(-1.6)
P 		192.4
(-1.2)
P 		266.4
(1.8)
P 		150
C 227.5
(0.2)
P 		182.9
(-2.3)
P 		169.7
(-3)
P 		194.5
(-1.6)
P 		192.4
(-1.8)
P 		279.1
(3)
P 		109
avr 173.3
(-2.8) 		262.4
(0.6) 		169.3
(-3) 		189.3
(-2.2) 		195.6
(-2) 		325.3
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 63.9
(3)
P 		28
(-2)
A 		21
(-3)
P 		34.6
(-1.1)
P 		43
B 50.4
(3)
P 		37.6
(0.7)
A 		16.8
(-3)
A 		47.1
(2.4)
P 		34
C 70.8
(3)
P 		34
(-3)
M 		50.8
(-0.3)
P 		36.8
(-2.5)
P 		37
avr 61.7
(3) 		33.2
(-2.3) 		29.5
(-3) 		39.5
(-1.1) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 26.7
(-3)
P 		109.3
(3)
P 		34.2
(-2.5)
P 		48.8
(-1.4)
P 		61
(-0.5)
P 		104.8
(2.7)
P 		83
B 51.2
(-2.2)
P 		98.8
(2.9)
P 		44
(-3)
P 		47.9
(-2.6)
P 		78.2
(0.7)
P 		99.3
(3)
P 		55
C 84.3
(2)
P 		55.8
(-1.2)
P 		43.2
(-2.5)
P 		39.1
(-3)
P 		62.2
(-0.4)
P 		93.4
(3)
P 		54
avr 54.1
(-1.6) 		88
(1.9) 		40.5
(-3) 		45.3
(-2.5) 		67.1
(-0.3) 		99.2
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2447
Sequence Type Exemplar sequence
Representative Public ID T23G11.9 NCBI
Target Description T23G11.9 /REP_DB=WormBase Gene ID /WP=CE16460 /TR=O45812 /GB=CAB03419.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059739 NCBI Caenorhabditis elegans T23G11.5 (T23G11.5) mRNA, complete cds. 11/11 A 
SNAP00000027645 ENSEMBL cdna:SNAP chromosome:CEL140:I:7691261:7693293:1 10/11 None
T23G11.5.2 ENSEMBL cdna:known chromosome:CEL140:I:7691467:7702316:1 gene:T23G11.5 11/11 A 
T23G11.5.1 ENSEMBL cdna:known chromosome:CEL140:I:7691468:7702323:1 gene:T23G11.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027665 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7688967-7693150(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G11.5
Entrez Gene 172530 Entrez gene
SwissProt Q9XVI0 EMBL-EBI
WormBase CE28965 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1594988_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
CANINE_2:CFA.14547.1.A1_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
CANINE_2:CFA.14547.1.A1_S_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
CANINE_2:CFA.20846.1.S1_S_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
CANINE_2:CFAAFFX.28582.1.S1_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
DROSOPHILA_2:1637284_AT dm
DROSGENOME1:144109_AT dm
CHICKEN:GGAAFFX.11751.1.S1_S_AT ralA binding protein 1 gga
HG-U133_PLUS_2:202845_S_AT ralA binding protein 1 hs
HG-U133A_2:202845_S_AT ralA binding protein 1 hs
HG-U133A:202845_S_AT ralA binding protein 1 hs
HG-FOCUS:202845_S_AT ralA binding protein 1 hs
HUGENEFL:L42542_AT ralA binding protein 1 hs
U133_X3P:G5803144_3P_A_AT ralA binding protein 1 hs
U133_X3P:HS.75447.2.S1_3P_X_AT ralA binding protein 1 hs
U133_X3P:HS.75447.2.S1_3P_A_AT ralA binding protein 1 hs
U133_X3P:HS.75447.0.S1_3P_A_AT ralA binding protein 1 hs
HG-U133A_2:202844_S_AT ralA binding protein 1 hs
HG-U133_PLUS_2:202844_S_AT ralA binding protein 1 hs
HG-U133A:202844_S_AT ralA binding protein 1 hs
HG-U133_PLUS_2:226957_X_AT ralA binding protein 1 hs
HG-U133B:226957_X_AT ralA binding protein 1 hs
HG-U95AV2:36628_AT ralA binding protein 1 hs
HG-U95D:74796_AT ralA binding protein 1 hs
HG-U133_PLUS_2:242073_AT RalA binding protein 1 hs
HG-U133B:242073_AT RalA binding protein 1 hs
HG-U95C:60570_AT RalA binding protein 1 hs
HU35KSUBC:RC_N50646_AT RalA binding protein 1 hs
U133_X3P:HS.47083.0.A1_3P_AT RalA binding protein 1 hs
MU11KSUBB:X80937_S_AT ralA binding protein 1 mm
MG-U74AV2:93255_AT ralA binding protein 1 mm
MOE430A:1448634_AT ralA binding protein 1 mm
MOUSE430A_2:1448634_AT ralA binding protein 1 mm
MOUSE430_2:1448634_AT ralA binding protein 1 mm
MOE430A:1417248_AT ralA binding protein 1 mm
MOUSE430A_2:1417248_AT ralA binding protein 1 mm
MOUSE430_2:1417248_AT ralA binding protein 1 mm
MU19KSUBA:TC23537_S_AT RalA binding protein 1 (Ralbp1), mRNA mm
MU19KSUBA:TC23711_F_AT RalA binding protein 1 (Ralbp1), mRNA mm
MU19KSUBC:TC35729_S_AT RalA binding protein 1 (Ralbp1), mRNA mm
MU19KSUBC:TC36027_AT RalA binding protein 1 (Ralbp1), mRNA mm
MU19KSUBC:TC41949_S_AT RalA binding protein 1 (Ralbp1), mRNA mm
RG-U34A:U82623_AT ralA binding protein 1 rn
RG-U34A:U82623_G_AT ralA binding protein 1 rn
RG-U34A:RC_AI235506_S_AT ralA binding protein 1 rn
RG-U34A:RC_AA900900_S_AT ralA binding protein 1 rn
RAE230A:1368218_AT ralA binding protein 1 rn
RAT230_2:1368218_AT ralA binding protein 1 rn
RAE230A:1368217_AT ralA binding protein 1 rn
RAT230_2:1368217_AT ralA binding protein 1 rn
Protein Similarities
Method ID Description E-Value
blast CAB03414 Hypothetical protein T23G11.5 [Caenorhabditis elegans] ref|NP_492140.1| T23G11.5 [Caenorhabditis elegans] 0.0
blast CAE57361 Hypothetical protein CBG00305 [Caenorhabditis briggsae] 1.0E-159
blast CAB03414 Hypothetical protein T23G11.5 [Caenorhabditis elegans] ref|NP_492140.1| T23G11.5 [Caenorhabditis elegans] 1.0E-116
blast CAE57361 Hypothetical protein CBG00305 [Caenorhabditis briggsae] 5.0E-91
blast XP_547670 PREDICTED: similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) [Canis familiaris] 3.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 2.6E-21
Pfam IPR000198 EMBL-EBI RhoGAP domain 2.6E-21
Sequence
Target Sequence 
>C. ELEGANS:181969_AT
tgcacatgatgcagctggactcatcaaaagatttctacgacaaatcccggagcccgttgt
accgatagaatttgattcaatagcagaatcatgtaattgtggtctcgcaacgacaactca
attaacaccgaaactcgtttgtagctgtggagcttctcgtcgaatgagagatgaattaaa
tcgtttgactgtggaaaggaagacactttttgtttttgtctttttacatgctcaacatgt
tatgggacagaatatttttatttttaaaaacaaaattctcaattaccttatttattctat
tttaaatttacacaagtttaagctgttcgaagaaatttattgtttaaaacttccaaaaat
tcaaattttcattaatgacttatttcaggaaaaagaaaacaaaatgggacttcaagcact
aggtcttttactacaaacgattcttgaaatgtcgcgaaaaatggtttgcttctccgctca
cgcaattcgtccatttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACATGATGCAGCTGGACTCATC 144 577 1140 Antisense
GATTTCTACGACAAATCCCGGAGCC 102 429 1169 Antisense
GGAGCCCGTTGTACCGATAGAATTT 653 513 1188 Antisense
TGTGGTCTCGCAACGACAACTCAAT 197 555 1237 Antisense
AACACCGAAACTCGTTTGTAGCTGT 283 133 1263 Antisense
GTTTGTAGCTGTGGAGCTTCTCGTC 682 449 1276 Antisense
GTTTTTGTCTTTTTACATGCTCAAC 60 449 1351 Antisense
AATTCTCAATTACCTTATTTATTCT 125 177 1413 Antisense
GACTTCAAGCACTAGGTCTTTTACT 106 371 1547 Antisense
CGAAAAATGGTTTGCTTCTCCGCTC 561 251 1594 Antisense
CGCTCACGCAATTCGTCCATTTGAT 609 255 1614 Antisense
Sequence Source Affymetrix Proprietary Database