[Home] | [Total List]

[181966_s_at]

Description K02F6.7 /REP_DB=WormBase Gene ID /WP=CE11668 /TR=O16628 /GB=AAB66108.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 10.1
(-1.5)
A 		9
(-3)
A 		9.9
(-1.8)
A 		13.4
(3)
A 		4
B 27.3
(-2.1)
A 		37
(-0.2)
A 		22.3
(-3)
A 		54.1
(3)
A 		32
C 7
(1)
A 		9
(3)
A 		2.9
(-3)
A 		7
(1)
A 		6
avr 14.8
(-1.6) 		18.3
(0) 		11.7
(-3) 		24.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 18.3
(-1.6)
A 		9.9
(-2.3)
A 		2.2
(-3)
A 		51.5
(1.3)
A 		60.3
(2)
A 		71.7
(3)
A 		70
B 31.6
(-1.7)
A 		26.3
(-2)
A 		51
(-0.3)
A 		12.6
(-3)
A 		50.8
(-0.3)
A 		98
(3)
P 		85
C 5.7
(-3)
A 		14.7
(-2.5)
A 		13.4
(-2.5)
A 		41
(-0.9)
A 		65.7
(0.5)
A 		107.7
(3)
P 		102
avr 18.5
(-2.9) 		17
(-3) 		22.2
(-2.6) 		35
(-1.6) 		58.9
(0.3) 		92.5
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.7
(3)
A 		1.9
(-3)
A 		2.6
(-0.7)
A 		2
(-2.7)
A 		2
B 8.7
(0.3)
A 		9.1
(0.7)
A 		5.2
(-3)
A 		11.5
(3)
A 		6
C 2.3
(1.9)
A 		2.6
(3)
A 		1
(-3)
A 		1.2
(-2.3)
A 		2
avr 4.9
(3) 		4.5
(1.8) 		2.9
(-3) 		4.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.4
(-2)
A 		3.5
(-2)
A 		0.5
(-3)
A 		13.1
(1.3)
A 		18.2
(3)
A 		17.5
(2.8)
A 		18
B 11
(-1.6)
A 		8.8
(-2)
A 		12.4
(-1.4)
A 		3.3
(-3)
A 		20.7
(0.1)
A 		36.5
(3)
P 		33
C 2.1
(-3)
A 		4.5
(-2.6)
A 		3.4
(-2.8)
A 		8.2
(-1.9)
A 		21.3
(0.4)
A 		36.1
(3)
P 		34
avr 5.5
(-3) 		5.6
(-3) 		5.4
(-3) 		8.2
(-2.3) 		20.1
(0.6) 		30
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181966_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4140
Sequence Type Exemplar sequence
Representative Public ID K02F6.7 NCBI
Target Description K02F6.7 /REP_DB=WormBase Gene ID /WP=CE11668 /TR=O16628 /GB=AAB66108.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061888(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061888 NCBI Caenorhabditis elegans K02F6.7 (K02F6.7) mRNA, complete cds. 10/11 None
SNAP00000019487 ENSEMBL cdna:SNAP chromosome:CEL140:II:2525350:2532997:-1 10/11 None
GENEFINDER00000019499 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2525350:2529245:-1 10/11 None
K02F6.7 ENSEMBL cdna:known chromosome:CEL140:II:2525235:2529245:-1 gene:K02F6.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2525348-2529244(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F6.7
Entrez Gene 173604 Entrez gene
SwissProt O16628 EMBL-EBI
WormBase CE36182 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66108 Hypothetical protein K02F6.7 [Caenorhabditis elegans] ref|NP_494289.2| K02F6.7 [Caenorhabditis elegans] 0.0
blast AAA82329 Hypothetical protein C04E7.2 [Caenorhabditis elegans] ref|NP_508090.1| C04E7.2 [Caenorhabditis elegans] sp|Q11193|YX22_CAEEL Hypothetical protein C04E7.2 in chromosome X 1.0E-39
blast T15405 hypothetical protein C04E7.2 - Caenorhabditis elegans 4.0E-36
Sequence
Target Sequence 
>C. ELEGANS:181966_S_AT
gagagactgcattttccgattgatctaccggatggcgtgcagaaaattgaaggcgagagt
aacgtggacgcctatatccgaacctattgcctgactgataaagagaaagccagagttccc
cgtctcaacgaatctgaaaagagagcaatgtttgatagggtaagggtatttttgaaaatt
aggccagtaggcaagaacctcttccagaaaattctaagcaacgagatcggagtccacatg
aagcacggagcaatgttgagggattcgaagttcaacccaaccgccggatcgcttacgcct
tgggctggaacaaagtgtgcggaggtctcctggttcctgccatcttcggggaggacgaga
aatcgacgtgcggatttgctcgctgcgagagttgtcaagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGACTGCATTTTCCGATTGATC 390 395 970 Antisense
ATTGATCTACCGGATGGCGTGCAGA 230 5 988 Antisense
GTAACGTGGACGCCTATATCCGAAC 535 461 1028 Antisense
CGAACCTATTGCCTGACTGATAAAG 504 251 1048 Antisense
TTCCCCGTCTCAACGAATCTGAAAA 309 699 1085 Antisense
GGCCAGTAGGCAAGAACCTCTTCCA 391 543 1151 Antisense
AGATCGGAGTCCACATGAAGCACGG 478 65 1193 Antisense
ATCGCTTACGCCTTGGGCTGGAACA 422 35 1257 Antisense
TTCCTGCCATCTTCGGGGAGGACGA 263 697 1303 Antisense
AAATCGACGTGCGGATTTGCTCGCT 279 117 1329 Antisense
TGCTCGCTGCGAGAGTTGTCAAGTA 633 581 1346 Antisense
Sequence Source Affymetrix Proprietary Database