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[181965_at]

Description C03H5.2 /REP_DB=WormBase Gene ID /WP=CE07895 /TR=O16658 /GB=AAB66127.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 65      6grp_total > 70      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1317
1 2 3 4 range
A 1039.3
(-2.9)
P 		1018.3
(-3)
P 		1100.6
(-2.6)
P 		2250
(3)
P 		1232
B 979.8
(-3)
P 		1104.5
(-2.4)
P 		1061.1
(-2.6)
P 		2134.2
(3)
P 		1154
C 957.8
(-2.9)
P 		933.4
(-3)
P 		1051.5
(-2.4)
P 		2096.9
(3)
P 		1164
avr 992.3
(-3) 		1018.7
(-2.9) 		1071.1
(-2.6) 		2160.4
(3) 		1168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 740
1 2 3 4 5 6 range
A 1440
(2)
P 		933.6
(-3)
P 		1216
(-0.2)
P 		1544
(3)
P 		1244
(0.1)
P 		1391.8
(1.5)
P 		610
B 863.9
(-3)
P 		950.5
(-2.3)
P 		969.4
(-2.1)
P 		1603.4
(3)
P 		1026.6
(-1.7)
P 		1132.8
(-0.8)
P 		740
C 1088.6
(-1.9)
P 		998.6
(-3)
P 		1358.8
(1.3)
P 		1497.5
(3)
P 		1030.2
(-2.6)
P 		1382.4
(1.6)
P 		499
avr 1130.8
(-1.3) 		960.9
(-3) 		1181.4
(-0.7) 		1548.3
(3) 		1100.3
(-1.6) 		1302.3
(0.5) 		587
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 378.4
(3)
P 		221
(-3)
P 		287.7
(-0.5)
P 		329.4
(1.1)
P 		157
B 312.4
(-1.1)
P 		272.8
(-2.2)
P 		245.9
(-3)
P 		454.8
(3)
P 		209
C 317.1
(-0)
P 		268.4
(-3)
P 		366.5
(3)
P 		353.6
(2.2)
P 		98
avr 336
(0.9) 		254.1
(-3) 		300
(-0.8) 		379.3
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 265.4
(-3)
P 		332
(0.2)
P 		264.8
(-3)
P 		391.6
(3)
P 		375.4
(2.2)
P 		338.9
(0.5)
P 		127
B 300.6
(-0.9)
P 		316.4
(-0.4)
P 		235.4
(-3)
P 		424.7
(3)
P 		417.1
(2.8)
P 		422.4
(2.9)
P 		189
C 403.5
(0.8)
P 		304.7
(-2.9)
P 		345.8
(-1.3)
P 		301.2
(-3)
P 		333.4
(-1.8)
P 		462.8
(3)
P 		162
avr 323.2
(-1) 		317.7
(-1.3) 		282
(-3) 		372.5
(1.3) 		375.3
(1.4) 		408
(3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4364
Sequence Type Exemplar sequence
Representative Public ID C03H5.2 NCBI
Target Description C03H5.2 /REP_DB=WormBase Gene ID /WP=CE07895 /TR=O16658 /GB=AAB66127.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061322 NCBI Caenorhabditis elegans C03H5.2 (C03H5.2) mRNA, complete cds. 11/11 None
SNAP00000020967 ENSEMBL cdna:SNAP chromosome:CEL140:II:386238:392537:1 11/11 None
GENEFINDER00000020972 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:388841:392537:1 11/11 None
C03H5.2 ENSEMBL cdna:known chromosome:CEL140:II:388832:392721:1 gene:C03H5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:388048-392537(+) 98.56 100.0
Public Domain and Genome References
Gene Title
Ensembl C03H5.2
Entrez Gene 173428 Entrez gene
SwissProt O16658 EMBL-EBI
WormBase CE32110 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582571_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 cfa
CANINE_2:CFA.3712.1.S1_S_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 cfa
CHICKEN:GGAAFFX.12463.1.S1_S_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 gga
CHICKEN:GGAAFFX.3342.2.S1_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 gga
HG-U95AV2:38208_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U133_PLUS_2:209865_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U133A:209865_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U133A_2:209865_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U133_PLUS_2:206770_S_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U133A:206770_S_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-FOCUS:206770_S_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U133A_2:206770_S_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HU35KSUBA:RC_AA449942_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HU35KSUBC:RC_AA011031_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
U133_X3P:G6912667_3P_A_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
U133_X3P:HS.28803.0.A1_3P_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U133_PLUS_2:226894_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U133B:226894_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U95C:65627_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U95C:65628_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HG-U95E:89353_R_AT Solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
HU35KSUBD:RC_AA429634_AT Solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 hs
MOE430A:1424579_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MOUSE430_2:1424579_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MOUSE430A_2:1424579_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MG-U74BV2:109184_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MG-U74CV2:168040_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MG-U74CV2:166402_I_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MOE430A:1424580_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MOUSE430A_2:1424580_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MOUSE430_2:1424580_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MOE430B:1429648_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MOUSE430_2:1429648_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MOE430B:1429649_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MOUSE430_2:1429649_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 mm
MG-U74CV2:135214_AT Solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 (Slc35a3), mRNA mm
MU19KSUBA:TC23895_AT Solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 (Slc35a3), mRNA mm
RAT230_2:1395589_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 rn
RAE230B:1395589_AT solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
15780 nucleotide-sugar transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
139 Golgi membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5338 nucleotide-sugar transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66127 Hypothetical protein C03H5.2 [Caenorhabditis elegans] ref|NP_493723.3| C03H5.2 [Caenorhabditis elegans] 0.0
blast AAB66127 Hypothetical protein C03H5.2 [Caenorhabditis elegans] ref|NP_493723.3| C03H5.2 [Caenorhabditis elegans] 1.0E-180
blast CAE62791 Hypothetical protein CBG06965 [Caenorhabditis briggsae] 1.0E-164
blast AAB66127 Hypothetical protein C03H5.2 [Caenorhabditis elegans] ref|NP_493723.3| C03H5.2 [Caenorhabditis elegans] 1.0E-126
blast CAE62791 Hypothetical protein CBG06965 [Caenorhabditis briggsae] 1.0E-113
blast AAB66130 Hypothetical protein C03H5.3 [Caenorhabditis elegans] ref|NP_493722.1| C03H5.3 [Caenorhabditis elegans] 1.0E-104
blast XP_790503 PREDICTED: similar to solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 [Strongylocentrotus purpuratus] 5.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493723.3 8 13-30,43-65,148-167,187-206,219-241,256-275,282-301,305-327
C03H5.2 8 13-30,43-65,148-167,187-206,219-241,256-275,282-301,305-327
SNAP00000020967 8 297-319,329-351,434-453,473-492,505-527,542-561,568-587,591-613
GENEFINDER00000020972 10 13-30,43-65,216-236,241-263,270-289,309-328,341-363,378-397,404-423,427-449
Sequence
Target Sequence 
>C. ELEGANS:181965_AT
cgattttctccgtcacaatgctcggaaaatcgcttcaccggtacaattggatggctctga
tccttctgacagctggagttgccctggtacagtacccctctggagattctactacttcta
agagtaccgcagctgaacacgatgcttctgataatattttaggcctcggagcagttctag
ccgcctgcttctcatccggattcgctggtgtctactttgaaaaaatcctgaaaacatcga
aagtctccctgtggatccgtaatattcagttggcatttttctcggtattcggagcacttc
tcgtctgttggctctatgattggcaggcaattagtgatgatggatttttgagaggatata
atggagttatttggattgtcgtgcttttgcaggcttacggagggctcgtgattgctctcg
tcgtcaagtacgctgacaatattctcaaaggatttgcagtctcgttatcaattattctct
catcattcacttcatggcttgttctcggagatttgactattacaacaaccttcgccatcg
gagccaccgttgttatctttgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTTTCTCCGTCACAATGCTCGG 32 249 641 Antisense
TTGGATGGCTCTGATCCTTCTGACA 555 705 687 Antisense
TGACAGCTGGAGTTGCCCTGGTACA 67 571 707 Antisense
TACAGTACCCCTCTGGAGATTCTAC 321 643 728 Antisense
TTAGGCCTCGGAGCAGTTCTAGCCG 301 545 799 Antisense
AAAGTCTCCCTGTGGATCCGTAATA 577 119 880 Antisense
TCTCGTCTGTTGGCTCTATGATTGG 455 611 939 Antisense
GCTTTTGCAGGCTTACGGAGGGCTC 92 305 1023 Antisense
TGCTCTCGTCGTCAAGTACGCTGAC 330 581 1053 Antisense
TCATTCACTTCATGGCTTGTTCTCG 328 619 1123 Antisense
GAGCCACCGTTGTTATCTTTGCAAC 340 385 1181 Antisense
Sequence Source Affymetrix Proprietary Database