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[181964_at]

Description C39B5.3 /REP_DB=WormBase Gene ID /WP=CE23579 /TR=Q9N5W9 /GB=AAF39768.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 30.3
(-2.4)
M 		10.8
(-3)
A 		56.3
(-1.5)
P 		195.3
(3)
P 		185
B 39.7
(-2)
A 		25.3
(-2.5)
A 		12.9
(-3)
A 		174.9
(3)
P 		162
C 29.8
(-2.9)
A 		41.4
(-2.5)
A 		25.9
(-3)
A 		204.3
(3)
P 		178
avr 33.3
(-2.7) 		25.8
(-3) 		31.7
(-2.8) 		191.5
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 21.4
(-2.1)
A 		19.7
(-2.3)
A 		57.3
(1)
P 		41.1
(-0.4)
A 		11.5
(-3)
A 		79.6
(3)
P 		68
B 37.4
(-3)
A 		38
(-2.9)
A 		39
(-2.7)
A 		46.6
(-1.5)
A 		44.6
(-1.8)
A 		73.2
(3)
P 		36
C 34.4
(-2.2)
A 		42.5
(-1.5)
P 		56.5
(-0.3)
A 		48.9
(-1)
A 		24.7
(-3)
A 		95.7
(3)
P 		71
avr 31.1
(-2.5) 		33.4
(-2.3) 		50.9
(-0.4) 		45.5
(-1) 		26.9
(-3) 		82.8
(3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 11
(-1)
M 		2.3
(-3)
A 		14.7
(-0.2)
P 		28.6
(3)
P 		26
B 12.7
(-1.3)
A 		6.2
(-2.4)
A 		3
(-3)
A 		37.3
(3)
P 		34
C 9.9
(-2.8)
A 		11.9
(-2.3)
A 		9
(-3)
A 		34.4
(3)
P 		25
avr 11.2
(-2) 		6.8
(-3) 		8.9
(-2.5) 		33.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 3.9
(-2.8)
A 		7
(-1.7)
A 		12.5
(0.4)
P 		10.4
(-0.4)
A 		3.5
(-3)
A 		19.4
(3)
P 		16
B 13
(-1.8)
A 		12.7
(-1.9)
A 		9.5
(-3)
A 		12.4
(-2)
A 		18.1
(-0.1)
A 		27.3
(3)
P 		18
C 12.8
(-1.8)
A 		13
(-1.8)
P 		14.4
(-1.4)
A 		9.8
(-2.6)
A 		8
(-3)
A 		32
(3)
P 		24
avr 9.9
(-3) 		10.9
(-2.6) 		12.1
(-2.2) 		10.9
(-2.6) 		9.9
(-3) 		26.2
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8316
Sequence Type Exemplar sequence
Representative Public ID C39B5.3 NCBI
Target Description C39B5.3 /REP_DB=WormBase Gene ID /WP=CE23579 /TR=Q9N5W9 /GB=AAF39768.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065115 NCBI Caenorhabditis elegans C39B5.3 (C39B5.3) mRNA, complete cds. 11/11 None
C39B5.3 ENSEMBL cdna:known chromosome:CEL140:III:2227749:2229216:1 gene:C39B5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012610 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2228309-2229216(+) 98.03 98.03
Public Domain and Genome References
Gene Title
Ensembl C39B5.3
Entrez Gene 183322 Entrez gene
SwissProt Q9N5W9 EMBL-EBI
WormBase CE23579 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39768 Hypothetical protein C39B5.3 [Caenorhabditis elegans] ref|NP_497516.1| C39B5.3 [Caenorhabditis elegans] 1.0E-167
blast AAC68927 Hypothetical protein T12B5.1 [Caenorhabditis elegans] ref|NP_497307.1| T12B5.1 [Caenorhabditis elegans] 4.0E-56
blast NP_503905 T28A11.21 [Caenorhabditis elegans] gb|AAC48129.2| Hypothetical protein T28A11.21 [Caenorhabditis elegans] 1.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.4E-55
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-5
Sequence
Target Sequence 
>C. ELEGANS:181964_AT
gtatcgacaacaccacttgtttcattaaccttttgaaatccgaagaatgtattaaagcac
aggaaattgaatttacaagaatcccattcaatgctgttgtctcgattctaccgatattcg
attctcaagcactggactatatggtattgctatttgcaaaatctgaccctattgagcaat
ttgaacgaataacctacttggatcaatggaaaaatgcaaaaaatctcagattatatgttt
ccaagttagaaacttcaatgctcaatatgtttcactttgaaaacttcagtattggcaaaa
tgtccaactttccagtagaaatggcagttaaaattcgagatgatctcataacgaaaagta
catttcattcttgctctatagaatttgacacatcaaattcgaacccgatagacattgcga
aaacattcaaaccggaatataatggtggaaacaaattcaatttcgaatattcaaacaatc
tctacaaattcaggatcaaatatgactttgctctttttattttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCGACAACACCACTTGTTTCAT 178 455 305 Antisense
CACCACTTGTTTCATTAACCTTTTG 385 201 315 Antisense
ATCCCATTCAATGCTGTTGTCTCGA 175 39 385 Antisense
GTTGTCTCGATTCTACCGATATTCG 550 437 400 Antisense
GATATTCGATTCTCAAGCACTGGAC 258 427 417 Antisense
TGCAAAATCTGACCCTATTGAGCAA 528 577 459 Antisense
GAACGAATAACCTACTTGGATCAAT 106 345 487 Antisense
TTCAATGCTCAATATGTTTCACTTT 556 685 558 Antisense
GAAAAGTACATTTCATTCTTGCTCT 191 355 657 Antisense
AATTCGAACCCGATAGACATTGCGA 213 177 700 Antisense
TATGACTTTGCTCTTTTTATTTTAA 307 655 805 Antisense
Sequence Source Affymetrix Proprietary Database