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[181963_at]

Description C23H3.9 /REP_DB=WormBase Gene ID /WP=CE27079 /TR=P91084 /GB=AAK31448.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 92      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 665
1 2 3 4 range
A 35.6
(-3)
A 		524.7
(2)
P 		624.1
(3)
P 		73.9
(-2.6)
A 		589
B 68.1
(-2.4)
A 		669.3
(3)
P 		556.5
(2)
P 		3.9
(-3)
A 		665
C 57.9
(-3)
A 		567.7
(2.4)
P 		628.7
(3)
P 		75.4
(-2.8)
A 		571
avr 53.9
(-3) 		587.2
(2.8) 		603.1
(3) 		51.1
(-3) 		552

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 155.7
(-2.8)
A 		465.1
(3)
P 		199.5
(-2)
P 		457.7
(2.9)
P 		380.5
(1.4)
P 		144.9
(-3)
A 		320
B 178.1
(-2.3)
P 		440
(3)
P 		202.7
(-1.8)
P 		385.1
(1.9)
P 		408.9
(2.4)
P 		141.2
(-3)
P 		299
C 148.4
(-2.2)
P 		416.5
(2.3)
P 		273
(-0.1)
P 		273
(-0.1)
P 		457
(3)
P 		103.9
(-3)
P 		353
avr 160.7
(-2.4) 		440.5
(3) 		225.1
(-1.2) 		371.9
(1.7) 		415.5
(2.5) 		130
(-3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 13
(-2.9)
A 		113.9
(1.1)
P 		163.1
(3)
P 		10.8
(-3)
A 		152
B 21.7
(-2.2)
A 		165.3
(3)
P 		129
(1.7)
P 		0.8
(-3)
A 		165
C 19.2
(-2.8)
A 		163.2
(1.4)
P 		219.1
(3)
P 		12.7
(-3)
A 		206
avr 18
(-2.6) 		147.5
(2.2) 		170.4
(3) 		8.1
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 28.7
(-3)
A 		165.4
(3)
P 		43.5
(-2.4)
P 		116.1
(0.8)
P 		114.8
(0.8)
P 		35.3
(-2.7)
A 		137
B 62
(-2.3)
P 		146.5
(2)
P 		49.2
(-3)
P 		102
(-0.3)
P 		166.1
(3)
P 		52.6
(-2.8)
P 		117
C 55
(-1.9)
P 		127.1
(1.9)
P 		69.5
(-1.2)
P 		54.9
(-1.9)
P 		147.9
(3)
P 		34.8
(-3)
P 		113
avr 48.6
(-2.6) 		146.3
(3) 		54.1
(-2.2) 		91
(-0.1) 		142.9
(2.8) 		40.9
(-3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5845
Sequence Type Exemplar sequence
Representative Public ID C23H3.9 NCBI
Target Description C23H3.9 /REP_DB=WormBase Gene ID /WP=CE27079 /TR=P91084 /GB=AAK31448.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026809(10), NM_061252(11), NM_061253(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026809 NCBI Caenorhabditis elegans C23H3.9d (C23H3.9) mRNA, complete cds. 10/11 None
NM_061252 NCBI Caenorhabditis elegans C23H3.9a (C23H3.9) mRNA, complete cds. 11/11 A 
NM_061253 NCBI Caenorhabditis elegans C23H3.9b (C23H3.9) mRNA, complete cds. 10/11 A 
SNAP00000015922 ENSEMBL cdna:SNAP chromosome:CEL140:II:74180:75506:-1 11/11 None
GENEFINDER00000015924 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:74180:78757:-1 11/11 None
C23H3.9d ENSEMBL cdna:known chromosome:CEL140:II:71682:77454:-1 gene:C23H3.9 10/11 A 
C23H3.9a ENSEMBL cdna:known chromosome:CEL140:II:71939:77512:-1 gene:C23H3.9 11/11 A 
C23H3.9b ENSEMBL cdna:known chromosome:CEL140:II:71939:77460:-1 gene:C23H3.9 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173391 4 3 NM_001026809 181963_at (10), 182086_s_at (11)
NM_061252 181963_at (11)
NM_061253 181963_at (10)
NM_061254 182086_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:74179-77295(-) 100.0 100.0
Public Domain and Genome References
Ensembl C23H3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81206 Hypothetical protein C23H3.9d [Caenorhabditis elegans] ref|NP_001021980.1| C23H3.9d [Caenorhabditis elegans] 0.0
blast AAN63453 Hypothetical protein C23H3.9b [Caenorhabditis elegans] ref|NP_493654.2| C23H3.9b [Caenorhabditis elegans] 0.0
blast AAN63452 Hypothetical protein C23H3.9a [Caenorhabditis elegans] ref|NP_493653.3| C23H3.9a [Caenorhabditis elegans] 0.0
blast CAE62815 Hypothetical protein CBG06992 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 9.2E-10
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 1.5E-8
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 9.2E-10
Sequence
Target Sequence 
>C. ELEGANS:181963_AT
acacaacgtctaccacttacgtggagcactgtaacccctaccgcagctccatcgcaaccg
attccaacagccacttcaagaaaagcgccatggtacatcaaggatcgtacagcttggcca
acatacaacagaatatctgctgaaaaggctctccaaaaaacatcaacaactcaggagaca
accacttctaccactgctcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaaaagttaactcatgggcgaaactg
tggacttctactgctgaaccaaaaagctatgtaaatgtgactgttctccaagcaggatct
gttagaccattaagggacggacaagtagaagcagttggggccatcacacttgtcaacgat
aatggttatattgtgcttattgacactggagccagcagtgacactgaaagactgttgcat
atgaaggcctttgcgtgcgtgaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACAACGTCTACCACTTACGTGGA 549 111 430 Antisense
TTACGTGGAGCACTGTAACCCCTAC 124 681 446 Antisense
CGATTCCAACAGCCACTTCAAGAAA 617 247 488 Antisense
AGCGCCATGGTACATCAAGGATCGT 647 81 513 Antisense
GATCGTACAGCTTGGCCAACATACA 396 417 532 Antisense
ATATCTGCTGAAAAGGCTCTCCAAA 627 19 562 Antisense
GCGAAACTGTGGACTTCTACTGCTG 65 289 781 Antisense
GTGACTGTTCTCCAAGCAGGATCTG 317 481 826 Antisense
AAGCAGTTGGGGCCATCACACTTGT 140 151 878 Antisense
TGTGCTTATTGACACTGGAGCCAGC 228 557 921 Antisense
ATATGAAGGCCTTTGCGTGCGTGAA 343 21 968 Antisense
Sequence Source Affymetrix Proprietary Database