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[181962_at]

Description F01F1.3 /REP_DB=WormBase Gene ID /WP=CE01229 /TR=Q19091 /GB=AAC46637.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 94      6grp_total > 68      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3182
1 2 3 4 range
A 1136.7
(-2.1)
P 		1040.4
(-2.3)
P 		739.2
(-3)
P 		3482.3
(3)
P 		2743
B 1132.5
(-2)
P 		1001.7
(-2.3)
P 		698.9
(-3)
P 		3364.5
(3)
P 		2666
C 1094
(-2.4)
P 		1019.6
(-2.5)
P 		781.7
(-3)
P 		3881.2
(3)
P 		3100
avr 1121.1
(-2.2) 		1020.6
(-2.4) 		739.9
(-3) 		3576
(3) 		2836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 639
1 2 3 4 5 6 range
A 567.2
(-1.8)
P 		574
(-1.7)
P 		567.1
(-1.8)
P 		481.5
(-2.6)
P 		442.9
(-3)
P 		1045.4
(3)
P 		603
B 571.7
(-1.1)
P 		557.7
(-1.3)
P 		547.3
(-1.4)
P 		406.3
(-3)
P 		617.5
(-0.6)
P 		926.3
(3)
P 		520
C 595.5
(-1.1)
P 		611.6
(-0.9)
P 		413.9
(-3)
P 		469
(-2.4)
P 		504.2
(-2)
P 		982.1
(3)
P 		568
avr 578.1
(-1.6) 		581.1
(-1.5) 		509.4
(-2.4) 		452.3
(-3) 		521.5
(-2.2) 		984.6
(3) 		532
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 555
1 2 3 4 range
A 413.9
(1.2)
P 		225.8
(-2.4)
P 		193.2
(-3)
P 		509.7
(3)
P 		317
B 361.1
(-0.8)
P 		247.4
(-2.1)
P 		161.9
(-3)
P 		717
(3)
P 		555
C 362.1
(-1.6)
P 		293.1
(-2.7)
P 		272.5
(-3)
P 		654.4
(3)
P 		382
avr 379
(-0.6) 		255.4
(-2.3) 		209.2
(-3) 		627
(3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 104.6
(-3)
P 		204.2
(1)
P 		123.5
(-2.2)
P 		122.1
(-2.3)
P 		133.6
(-1.8)
P 		254.5
(3)
P 		150
B 198.9
(-0.7)
P 		185.6
(-1)
P 		132.9
(-2.4)
P 		107.6
(-3)
P 		250.9
(0.6)
P 		345.4
(3)
P 		238
C 220.7
(0.2)
P 		186.6
(-0.6)
P 		105.4
(-2.7)
P 		94.3
(-3)
P 		163.1
(-1.2)
P 		328.8
(3)
P 		235
avr 174.7
(-1) 		192.1
(-0.5) 		120.6
(-2.6) 		108
(-3) 		182.5
(-0.8) 		309.6
(3) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6292
Sequence Type Exemplar sequence
Representative Public ID F01F1.3 NCBI
Target Description F01F1.3 /REP_DB=WormBase Gene ID /WP=CE01229 /TR=Q19091 /GB=AAC46637.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065869(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065869 NCBI Caenorhabditis elegans F01F1.3 (F01F1.3) mRNA, complete cds. 10/11 None
SNAP00000009926 ENSEMBL cdna:SNAP chromosome:CEL140:III:5873004:5874551:1 10/11 None
GENEFINDER00000009937 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5873004:5874551:1 10/11 None
F01F1.3 ENSEMBL cdna:known chromosome:CEL140:III:5873004:5874629:1 gene:F01F1.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5873002-5874550(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01F1.3
Entrez Gene 175826 Entrez gene
SwissProt Q19091 EMBL-EBI
WormBase CE29250 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46637 Hypothetical protein F01F1.3 [Caenorhabditis elegans] ref|NP_498270.1| F01F1.3 [Caenorhabditis elegans] 1.0E-132
blast CAE64374 Hypothetical protein CBG09061 [Caenorhabditis briggsae] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:181962_AT
actacggagcctatttgcatctcttgcaactctcacacaacaaggaccaattccagtgca
agcctacagtatgcttgctggtcaacattctacagaagttctcgccgaacacatgaggct
ccgatggctttcggatggacgctttggaccagttgctgcaaatatactaatgcacatcca
taagacagccgggatacttctcagcgagaatggtcgcgttcttcacgatttgaattcata
tctcgtcgaacgaatcattgtaaaattgcgtcataaacttatcagtgaagatccaattgt
cactaaacatgtccgtcaaatattcattcatgtgtatgatctttgggcatttggatggag
tgagctgaatattcctgaatgtcttctcactttgagtgcagaagggaagctatcgattgt
tgatcagacaccacttcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACGGAGCCTATTTGCATCTCTT 287 101 27 Antisense
TTTGCATCTCTTGCAACTCTCACAC 223 669 40 Antisense
CCAATTCCAGTGCAAGCCTACAGTA 8 277 73 Antisense
GTATGCTTGCTGGTCAACATTCTAC 233 455 95 Antisense
GAAGTTCTCGCCGAACACATGAGGC 569 337 121 Antisense
ACACATGAGGCTCCGATGGCTTTCG 494 109 135 Antisense
GGCTTTCGGATGGACGCTTTGGACC 174 537 152 Antisense
TAAGACAGCCGGGATACTTCTCAGC 240 629 207 Antisense
CAGCGAGAATGGTCGCGTTCTTCAC 693 93 228 Antisense
ATTCCTGAATGTCTTCTCACTTTGA 129 9 397 Antisense
GATTGTTGATCAGACACCACTTCGG 393 435 441 Antisense
Sequence Source Affymetrix Proprietary Database