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[181960_at]

Description C01G12.2 /REP_DB=WormBase Gene ID /WP=CE15572 /TR=O45234 /GB=CAB03813.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2.7
(-3)
A 		20.5
(0.3)
A 		3.5
(-2.9)
A 		35.5
(3)
A 		33
B 3.3
(-3)
A 		3.3
(-3)
A 		27.4
(3)
A 		7.6
(-1.9)
A 		24
C 2.2
(-3)
A 		24.4
(0.2)
A 		7
(-2.3)
A 		43.8
(3)
A 		42
avr 2.7
(-3) 		16.1
(0.1) 		12.6
(-0.7) 		29
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 1.6
(-3)
A 		5.6
(-2.3)
A 		21.8
(0.7)
A 		3.6
(-2.6)
A 		12.8
(-0.9)
A 		34.1
(3)
A 		33
B 3.7
(-2.3)
A 		2.3
(-2.9)
A 		2
(-3)
A 		10.4
(0.5)
A 		11.9
(1.1)
A 		16.5
(3)
A 		15
C 15.5
(0.9)
A 		5.9
(-1.9)
A 		2.1
(-3)
A 		22.2
(2.9)
A 		4
(-2.4)
A 		22.7
(3)
A 		21
avr 6.9
(-2.3) 		4.6
(-3) 		8.6
(-1.8) 		12.1
(-0.7) 		9.6
(-1.5) 		24.4
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1
(-2.9)
A 		4.4
(1.9)
A 		0.9
(-3)
A 		5.2
(3)
A 		4
B 1.1
(-2.7)
A 		0.8
(-3)
A 		6.4
(3)
A 		1.6
(-2.1)
A 		6
C 0.7
(-3)
A 		7
(2.6)
A 		2.4
(-1.5)
A 		7.4
(3)
A 		7
avr 0.9
(-3) 		4.1
(2.1) 		3.2
(0.6) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.3
(-3)
A 		2
(-1.7)
A 		4.8
(0.4)
A 		0.9
(-2.6)
A 		3.9
(-0.3)
A 		8.3
(3)
A 		8
B 1.3
(-2.2)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		2.8
(-0.6)
A 		4.8
(1.5)
A 		6.2
(3)
A 		6
C 5.8
(1.5)
A 		1.8
(-1.9)
A 		0.5
(-3)
A 		4.5
(0.4)
A 		1.3
(-2.3)
A 		7.6
(3)
A 		7
avr 2.5
(-2) 		1.5
(-3) 		1.9
(-2.6) 		2.7
(-1.8) 		3.3
(-1.2) 		7.4
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2805
Sequence Type Exemplar sequence
Representative Public ID C01G12.2 NCBI
Target Description C01G12.2 /REP_DB=WormBase Gene ID /WP=CE15572 /TR=O45234 /GB=CAB03813.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026732, NM_001026734, NM_064631, NM_064628
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000024278 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14576848:14578488:1 11/11 None
C01G12.2 ENSEMBL cdna:known chromosome:CEL140:II:14577057:14578488:1 gene:C01G12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026734 7/11 Cross Hyb Matching Probes None
SNAP00000024262 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14577053-14578485(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01G12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T18827 hypothetical protein C01G12.2 - Caenorhabditis elegans 1.0E-123
blast CAI94503 Hypothetical protein C01G12.13 [Caenorhabditis elegans] ref|NP_001021905.1| C01G12.13 [Caenorhabditis elegans] 1.0E-95
blast CAI94503 Hypothetical protein C01G12.13 [Caenorhabditis elegans] ref|NP_001021905.1| C01G12.13 [Caenorhabditis elegans] 3.0E-71
blast CAB03813 Hypothetical protein C01G12.2 [Caenorhabditis elegans] ref|NP_497029.2| Nematode Specific Peptide family, group B family member (nspb-7) [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:181960_AT
caagctcgtgagcaggccaagcagaaggagctggaagagcaactgattcgccagattcaa
agatcggagtcacgtcaaagcccagacgacacaatgaaaaatgtttcttcaatccaattt
gagtctcaaaattcgcatattcaacgtaagaagcaacaacaagaagctgcgaaaacggtc
atcgatacggtgtcaattgagtcacaaatgatcagagatgctactttgattgtaagattc
aggggaaacggtttttttttgggtttctgtcttgttagattttggtataaaagtagacaa
ttcctctacaattcatcgacactttcaagtcagttcaatcagttcagtatgttcgctaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCTCGTGAGCAGGCCAAGCAGA 482 185 337 Antisense
GAGCTGGAAGAGCAACTGATTCGCC 408 387 364 Antisense
GATTCGCCAGATTCAAAGATCGGAG 597 431 381 Antisense
AAGATCGGAGTCACGTCAAAGCCCA 410 155 396 Antisense
GTCAAAGCCCAGACGACACAATGAA 333 465 410 Antisense
GTTTCTTCAATCCAATTTGAGTCTC 670 449 439 Antisense
AAACGGTCATCGATACGGTGTCAAT 74 125 509 Antisense
GGGTTTCTGTCTTGTTAGATTTTGG 203 497 597 Antisense
ATTCCTCTACAATTCATCGACACTT 690 7 636 Antisense
GACACTTTCAAGTCAGTTCAATCAG 222 367 654 Antisense
CAATCAGTTCAGTATGTTCGCTAAG 37 181 672 Antisense
Sequence Source Affymetrix Proprietary Database