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[181959_at]

Description ZK1053.2 /REP_DB=WormBase Gene ID /WP=CE15517 /TR=O45994 /GB=CAB04976.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 14.7
(-3)
A 		61.7
(2.4)
A 		32.2
(-1)
A 		67.3
(3)
A 		53
B 48.7
(-1)
A 		115.9
(3)
A 		35.3
(-1.7)
A 		14
(-3)
A 		102
C 59.6
(0.1)
A 		86.8
(2.3)
A 		20.7
(-3)
A 		95.3
(3)
A 		75
avr 41
(-1.8) 		88.1
(3) 		29.4
(-3) 		58.9
(0) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 41.9
(-1.4)
A 		38.1
(-1.5)
A 		7.7
(-3)
A 		87.4
(0.8)
P 		133.1
(3)
P 		120.3
(2.4)
P 		125
B 56.5
(-0.6)
A 		14.7
(-3)
A 		30.2
(-2.1)
A 		72.1
(0.3)
A 		99
(1.9)
P 		118.4
(3)
P 		104
C 42.9
(-3)
A 		45.4
(-2.9)
A 		43
(-3)
A 		63.2
(-1.8)
A 		112.3
(1)
P 		147.4
(3)
P 		105
avr 47.1
(-1.8) 		32.7
(-2.7) 		27
(-3) 		74.2
(-0.2) 		114.8
(2.2) 		128.7
(3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 5.4
(-3)
A 		13.4
(3)
A 		8.4
(-0.8)
A 		9.8
(0.3)
A 		8
B 15.5
(-0.1)
A 		28.6
(3)
A 		8.2
(-1.8)
A 		3
(-3)
A 		26
C 19.7
(1.2)
A 		25
(3)
A 		7.2
(-3)
A 		16.1
(0)
A 		18
avr 13.5
(-0.7) 		22.3
(3) 		7.9
(-3) 		9.6
(-2.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 7.7
(-2.1)
A 		13.5
(-1.2)
A 		1.7
(-3)
A 		22.2
(0.2)
P 		40.2
(3)
P 		29.3
(1.3)
P 		39
B 19.7
(-0.7)
A 		4.9
(-3)
A 		7.3
(-2.6)
A 		19.1
(-0.8)
A 		40.2
(2.4)
P 		44.1
(3)
P 		39
C 15.9
(-2.2)
A 		13.8
(-2.5)
A 		10.9
(-3)
A 		12.7
(-2.7)
A 		36.3
(1)
P 		49.3
(3)
P 		38
avr 14.4
(-1.6) 		10.7
(-2.3) 		6.6
(-3) 		18
(-1) 		38.9
(2.7) 		40.9
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1274
Sequence Type Exemplar sequence
Representative Public ID ZK1053.2 NCBI
Target Description ZK1053.2 /REP_DB=WormBase Gene ID /WP=CE15517 /TR=O45994 /GB=CAB04976.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060919 NCBI Caenorhabditis elegans ZK1053.2 (ZK1053.2) mRNA, complete cds. 11/11 None
SNAP00000040798 ENSEMBL cdna:SNAP chromosome:CEL140:I:13242110:13242779:1 9/11 None
ZK1053.2 ENSEMBL cdna:known chromosome:CEL140:I:13240276:13242779:1 gene:ZK1053.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040805 8/11 Cross Hyb Matching Probes None
SNAP00000040797 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13240301-13242710(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1053.2
Entrez Gene 191507 Entrez gene
SwissProt O45994 EMBL-EBI
WormBase CE15517 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04976 Hypothetical protein ZK1053.2 [Caenorhabditis elegans] ref|NP_493320.1| ZK1053.2 [Caenorhabditis elegans] 0.0
blast CAE73005 Hypothetical protein CBG20354 [Caenorhabditis briggsae] 1.0E-91
blast CAB04976 Hypothetical protein ZK1053.2 [Caenorhabditis elegans] ref|NP_493320.1| ZK1053.2 [Caenorhabditis elegans] 1.0E-69
blast CAE73005 Hypothetical protein CBG20354 [Caenorhabditis briggsae] 2.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493320.1 1 391-413
ZK1053.2 1 391-413
SNAP00000040798 1 43-65
Sequence
Target Sequence 
>C. ELEGANS:181959_AT
tcgaagatcccgtctcgttcttcgacagctcgtcccacaacaaccactgaagaatacgat
gcggatacggaagaagacgccgaaaaacttgaaatgatgtcagggaagaggaaagtggat
aatggaactactgtatatgttcccagtgatccggatgcccaggaaggaatcgatgcgaac
atccttatctacatcctactccttgtccttctcatttggtgcttctgtattgccctgtgt
cttatttggatgtacgtgtgtgccaagcaacgaaaacacaagatgatcagtaaagctgaa
gaggaacgtgaagctatgttggcacttttggagaaaggacacgagacggagcacagttct
cgtagagctaaaccatcggtttctgtggaaagtgatgagtttgataaggagtggaaaaat
atcaaaccatccaagtacacccccgcttctgtttccactaacgaaactaaatccgaattg
gagagtgtgaagcaaccggttgcagctacccatgtcgctcctgtagaagtttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAAGATCCCGTCTCGTTCTTCGA 237 601 994 Antisense
ATATGTTCCCAGTGATCCGGATGCC 629 17 1128 Antisense
ATGCGAACATCCTTATCTACATCCT 65 43 1166 Antisense
CATTTGGTGCTTCTGTATTGCCCTG 64 215 1206 Antisense
GTATTGCCCTGTGTCTTATTTGGAT 636 451 1220 Antisense
GATGTACGTGTGTGCCAAGCAACGA 581 409 1242 Antisense
GTGAAGCTATGTTGGCACTTTTGGA 47 483 1301 Antisense
GACGGAGCACAGTTCTCGTAGAGCT 390 377 1338 Antisense
ATATCAAACCATCCAAGTACACCCC 111 21 1412 Antisense
TGAAGCAACCGGTTGCAGCTACCCA 442 573 1481 Antisense
CCATGTCGCTCCTGTAGAAGTTTCA 337 269 1503 Antisense
Sequence Source Affymetrix Proprietary Database