[Home] | [Total List]

[181958_at]

Description T06D4.1 /REP_DB=WormBase Gene ID /WP=CE13301 /TR=O16649 /GB=AAB66121.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1.6
(-3)
A 		2.8
(-0.3)
A 		4.3
(3)
A 		3.4
(1)
A 		3
B 3.4
(-2.6)
A 		3.9
(-2.5)
A 		1.5
(-3)
A 		33.1
(3)
A 		32
C 4.5
(1)
A 		4.8
(1.6)
A 		2.5
(-3)
A 		5.5
(3)
A 		3
avr 3.2
(-2.8) 		3.8
(-2.5) 		2.8
(-3) 		14
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 3.8
(-2.9)
A 		2.9
(-2.9)
A 		1.6
(-3)
A 		3.2
(-2.9)
A 		66.9
(-0.1)
A 		136.4
(3)
P 		135
B 1.4
(-3)
A 		3.3
(-2.9)
A 		2.3
(-3)
A 		4.2
(-2.9)
A 		90.1
(0.4)
P 		156.8
(3)
P 		155
C 2
(-3)
A 		3.2
(-2.9)
A 		5.4
(-2.9)
A 		3.9
(-2.9)
A 		75.6
(0.2)
P 		140.5
(3)
P 		139
avr 2.4
(-3) 		3.1
(-3) 		3.1
(-3) 		3.8
(-2.9) 		77.5
(0.2) 		144.6
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-2)
A 		0.6
(-2)
A 		1.1
(3)
A 		0.5
(-3)
A 		1
B 1.1
(-2.4)
A 		1
(-2.5)
A 		0.4
(-3)
A 		7
(3)
A 		7
C 1.5
(3)
A 		1.4
(2)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1
avr 1.1
(-2.1) 		1
(-2.4) 		0.8
(-3) 		2.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 0.7
(-2.9)
A 		1
(-2.9)
A 		0.4
(-3)
A 		0.8
(-2.9)
A 		20.2
(0.6)
A 		33.2
(3)
P 		33
B 0.5
(-3)
A 		1.1
(-2.9)
A 		0.5
(-3)
A 		1.1
(-2.9)
A 		36.6
(0.7)
P 		58.5
(3)
P 		58
C 0.7
(-3)
A 		1
(-3)
A 		1.4
(-2.9)
A 		0.8
(-3)
A 		24.5
(0.1)
P 		47
(3)
P 		46
avr 0.6
(-3) 		1
(-2.9) 		0.8
(-3) 		0.9
(-3) 		27.1
(0.5) 		46.2
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4413
Sequence Type Exemplar sequence
Representative Public ID T06D4.1 NCBI
Target Description T06D4.1 /REP_DB=WormBase Gene ID /WP=CE13301 /TR=O16649 /GB=AAB66121.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062126 NCBI Caenorhabditis elegans T06D4.1 (T06D4.1) mRNA, complete cds. 11/11 None
SNAP00000039453 ENSEMBL cdna:SNAP chromosome:CEL140:II:3381831:3383782:1 11/11 None
GENEFINDER00000039459 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3381831:3383911:1 11/11 None
T06D4.1 ENSEMBL cdna:known chromosome:CEL140:II:3381831:3383948:1 gene:T06D4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3381829-3383781(+) 99.62 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D4.1
Entrez Gene 173682 Entrez gene
SwissProt O16649 EMBL-EBI
WormBase CE13301 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66121 Hypothetical protein T06D4.1 [Caenorhabditis elegans] ref|NP_494527.1| T06D4.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181958_AT
tcttccacttggactgcagagttggaatcattcgcaaacgagttgagtcggaaaagaggc
acgttcattaacgattattgggccacgattcgggatcaaaatgaagcaggtgatttggat
cccaaacggacactctttgcggactttcgagaccagcattccgtgtttggtaatgttcaa
ttcgatatcttccgtgaacgcttggcgcaattggaaaagctttggcattcgcaaatgagg
atgttcgatgttccggataaggttctatgtgtgactggtatagtgacggatacaatgact
gaaatgttgatgggagtcaaagacgggaagcccaatatcacaccgttcctgaaaaaagct
cgcatattttatcgcttaagtgatggagctgaaacatccgaagcaccagcagaagcatca
gcaagagcatccgaagcgccagaagctccagcgttaccaccaaaacgttccagaggtatc
aagagaaagctgagtgaatacgccgaagagctctttgaatcaaaaaagcctaagagcgac
gagcttccgactgctgagcaatggatgtatttcctccaacactgtctacaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCACTTGGACTGCAGAGTTGG 188 617 709 Antisense
GATTATTGGGCCACGATTCGGGATC 336 429 781 Antisense
TCCCAAACGGACACTCTTTGCGGAC 47 587 828 Antisense
TTCGAGACCAGCATTCCGTGTTTGG 522 695 854 Antisense
CGATATCTTCCGTGAACGCTTGGCG 401 241 891 Antisense
GACGGGAAGCCCAATATCACACCGT 626 377 1030 Antisense
TCAGCAAGAGCATCCGAAGCGCCAG 352 621 1126 Antisense
GTGAATACGCCGAAGAGCTCTTTGA 326 481 1202 Antisense
AGCCTAAGAGCGACGAGCTTCCGAC 291 83 1235 Antisense
GAGCTTCCGACTGCTGAGCAATGGA 322 389 1249 Antisense
ATTTCCTCCAACACTGTCTACAAGG 98 15 1277 Antisense
Sequence Source Affymetrix Proprietary Database