[Home] | [Total List]

[181956_at]

Description C09E8.2 /REP_DB=WormBase Gene ID /WP=CE19348 /TR=O76556 /GB=AAC26254.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_high_8_8 > 46      6grp_highest_nonorm > 62      6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 735
1 2 3 4 range
A 69.1
(-3)
P 		694
(3)
P 		660.3
(2.7)
P 		175.6
(-2)
P 		625
B 82.2
(-2.8)
P 		721.6
(2.6)
P 		770.1
(3)
P 		60.8
(-3)
P 		709
C 35
(-3)
A 		714.1
(3)
P 		617.4
(2.1)
P 		142.8
(-2)
P 		679
avr 62.1
(-3) 		709.9
(3) 		682.6
(2.7) 		126.4
(-2.4) 		648

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 692
1 2 3 4 5 6 range
A 128.6
(-3)
P 		501.4
(0.5)
P 		399.6
(-0.5)
P 		611.6
(1.5)
P 		774.1
(3)
P 		285.6
(-1.5)
P 		646
B 141.1
(-3)
P 		529.3
(0.8)
P 		431.1
(-0.2)
P 		606.7
(1.5)
P 		759.1
(3)
P 		274.2
(-1.7)
P 		618
C 82
(-3)
P 		523.4
(1.3)
P 		372.5
(-0.2)
P 		697.1
(3)
P 		629.4
(2.3)
P 		269.9
(-1.2)
P 		615
avr 117.2
(-3) 		518
(1) 		401.1
(-0.2) 		638.5
(2.2) 		720.9
(3) 		276.6
(-1.4) 		604
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 25.1
(-3)
P 		150.7
(2.1)
P 		172.6
(3)
P 		25.7
(-3)
P 		148
B 26.2
(-2.5)
P 		178.2
(3)
P 		178.4
(3)
P 		13
(-3)
P 		165
C 11.6
(-3)
A 		205.3
(2.7)
P 		215.2
(3)
P 		24.1
(-2.6)
P 		204
avr 21
(-3) 		178.1
(2.6) 		188.7
(3) 		20.9
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 23.7
(-3)
P 		178.3
(1.4)
P 		87
(-1.2)
P 		155.1
(0.8)
P 		233.6
(3)
P 		69.5
(-1.7)
P 		210
B 49.1
(-3)
P 		176.2
(-0.1)
P 		104.7
(-1.7)
P 		160.7
(-0.4)
P 		308.4
(3)
P 		102.2
(-1.8)
P 		259
C 30.4
(-3)
P 		159.7
(1.5)
P 		94.8
(-0.8)
P 		140.2
(0.8)
P 		203.7
(3)
P 		90.4
(-0.9)
P 		173
avr 34.4
(-3) 		171.4
(0.8) 		95.5
(-1.3) 		152
(0.3) 		248.6
(3) 		87.4
(-1.5) 		214
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4153
Sequence Type Exemplar sequence
Representative Public ID C09E8.2 NCBI
Target Description C09E8.2 /REP_DB=WormBase Gene ID /WP=CE19348 /TR=O76556 /GB=AAC26254.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061355(11), NM_182156(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061355 NCBI Caenorhabditis elegans C09E8.2a (C09E8.2) mRNA, complete cds. 11/11 None
NM_182156 NCBI Caenorhabditis elegans C09E8.2b (C09E8.2) mRNA, complete cds. 9/11 None
GENEFINDER00000011947 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:553100:554696:1 11/11 None
C09E8.2a ENSEMBL cdna:known chromosome:CEL140:II:553093:554725:1 gene:C09E8.2 11/11 None
C09E8.2b ENSEMBL cdna:known chromosome:CEL140:II:553842:554696:1 gene:C09E8.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:553099-554696(+) 100.0 100.0
Public Domain and Genome References
Ensembl C09E8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26254 Hypothetical protein C09E8.2a [Caenorhabditis elegans] ref|NP_493756.1| C09E8.2a [Caenorhabditis elegans] 1.0E-170
blast CAE62894 Hypothetical protein CBG07082 [Caenorhabditis briggsae] 1.0E-141
blast AAN60535 Hypothetical protein C09E8.2b [Caenorhabditis elegans] ref|NP_871956.1| C09E8.2b [Caenorhabditis elegans] 1.0E-100
blast AAC26254 Hypothetical protein C09E8.2a [Caenorhabditis elegans] ref|NP_493756.1| C09E8.2a [Caenorhabditis elegans] 6.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 3.8E-122
Pfam IPR002918 EMBL-EBI Lipase, class 2 8.1E-90
Sequence
Target Sequence 
>C. ELEGANS:181956_AT
aactcggagatctatggcacaacttggggagacagtgggaggacacccgttggccttgtg
gatatgaaatgcaactatgttaagcagatacgagcaatgataattgcagtccgacagtac
actgggcagaaagttgacgtcatcggctactcaatgggctccccgttagctagaaaagca
attcttggaggacaatgtgtggatacccgggagattttgggtgctccgctgactgagctc
gtggacaccttcctgtcagttgctggtgcaaattatggtagtgtcctgtgcattctgccg
gtgcctgttggaacatgtaataaaaaaaacggactgcactgtgactcggaattccttcaa
gatatcaataaccagcatcgctacgagggatcccatgtcttcagtatattctcaactgca
gatgaaaaaataggattcagatcctgtggaagaccagtgtccccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCGGAGATCTATGGCACAACTT 572 139 289 Antisense
ACACCCGTTGGCCTTGTGGATATGA 319 109 331 Antisense
GCAGTCCGACAGTACACTGGGCAGA 462 311 394 Antisense
GAAAGTTGACGTCATCGGCTACTCA 555 359 417 Antisense
TGGGCTCCCCGTTAGCTAGAAAAGC 5 553 443 Antisense
ACACCTTCCTGTCAGTTGCTGGTGC 292 105 533 Antisense
TATGGTAGTGTCCTGTGCATTCTGC 528 655 562 Antisense
TGCACTGTGACTCGGAATTCCTTCA 379 577 623 Antisense
GCATCGCTACGAGGGATCCCATGTC 36 311 663 Antisense
GATCCCATGTCTTCAGTATATTCTC 486 417 677 Antisense
TCCTGTGGAAGACCAGTGTCCCCGA 380 593 730 Antisense
Sequence Source Affymetrix Proprietary Database