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[181953_at]

Description Y8A9A.4 /REP_DB=WormBase Gene ID /WP=CE21338 /TR=Q9TYK7 /GB=AAK18993.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 2
(-3)
A 		2.4
(-2.9)
A 		2.4
(-2.9)
A 		24.4
(3)
A 		22
B 6.2
(0.5)
A 		9.4
(3)
A 		6.7
(0.9)
A 		1.8
(-3)
A 		8
C 2.9
(-3)
A 		3.2
(-2.9)
A 		2.7
(-3)
A 		35.8
(3)
A 		33
avr 3.7
(-3) 		5
(-2.5) 		3.9
(-2.9) 		20.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.2
(-3)
A 		4.5
(0.1)
A 		6.7
(3)
A 		4.5
(0.1)
A 		4.7
(0.3)
A 		3.2
(-1.7)
A 		5
B 5.8
(-0.1)
A 		2
(-2.8)
A 		2.4
(-2.5)
A 		1.7
(-3)
A 		3
(-2.1)
A 		10.1
(3)
A 		8
C 2.7
(-3)
A 		4.2
(-2.4)
A 		18
(3)
A 		5.5
(-1.9)
A 		5.2
(-2)
A 		4.3
(-2.4)
A 		15
avr 3.6
(-3) 		3.6
(-3) 		9
(3) 		3.9
(-2.7) 		4.3
(-2.2) 		5.9
(-0.4) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.7
(-2.6)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		3.6
(3)
A 		3
B 2
(2.1)
A 		2.3
(3)
A 		1.5
(0.5)
A 		0.4
(-3)
A 		2
C 1
(-2.9)
A 		0.9
(-3)
A 		0.9
(-3)
A 		6
(3)
A 		5
avr 1.2
(-2.5) 		1.2
(-2.5) 		1
(-3) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.6
(3)
A 		1.5
(2.5)
A 		1.2
(1)
A 		1.4
(2)
A 		0.8
(-1)
A 		1
B 2
(-0.3)
A 		0.7
(-2.6)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		1.2
(-1.7)
A 		3.8
(3)
A 		3
C 1
(-3)
A 		1.3
(-2.5)
A 		4.6
(3)
A 		1.1
(-2.8)
A 		1.7
(-1.8)
A 		1.4
(-2.3)
A 		4
avr 1.1
(-2.1) 		1.2
(-1.6) 		2.2
(3) 		0.9
(-3) 		1.4
(-0.7) 		2
(2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181953_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4749
Sequence Type Exemplar sequence
Representative Public ID Y8A9A.4 NCBI
Target Description Y8A9A.4 /REP_DB=WormBase Gene ID /WP=CE21338 /TR=Q9TYK7 /GB=AAK18993.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062250(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062250 NCBI Caenorhabditis elegans Y8A9A.4 (Y8A9A.4) mRNA, complete cds. 10/11 None
GENEFINDER00000029993 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3790721:3792096:1 11/11 None
Y8A9A.4 ENSEMBL cdna:known chromosome:CEL140:II:3790744:3791389:1 gene:Y8A9A.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029988 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3790719-3791388(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y8A9A.4
Entrez Gene 189401 Entrez gene
SwissProt Q9TYK7 EMBL-EBI
WormBase CE36346 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18994 Hypothetical protein Y8A9A.3 [Caenorhabditis elegans] ref|NP_494652.1| Y8A9A.3 [Caenorhabditis elegans] 8.0E-55
blast AAK18993 Hypothetical protein Y8A9A.4 [Caenorhabditis elegans] ref|NP_494651.2| Y8A9A.4 [Caenorhabditis elegans] 2.0E-41
blast AAK18993 Hypothetical protein Y8A9A.4 [Caenorhabditis elegans] ref|NP_494651.2| Y8A9A.4 [Caenorhabditis elegans] 9.0E-40
blast AAB95039 Hypothetical protein T24E12.1 [Caenorhabditis elegans] ref|NP_494650.1| T24E12.1 [Caenorhabditis elegans] 6.0E-9
Sequence
Target Sequence 
>C. ELEGANS:181953_AT
aaccatcaaaatcagcatcccggctataaccttggctatccagcaccatctccactattt
caacaacctccgccaaattatttctatcatgaaaatcaacaactcaccagcaaatttaac
ttggtcacacgccaaaatgcggacctcaaaatcggattgagaggagttttgttttcaatc
caagggcttcgcgaagagttatccgtggcaaagcaacgcattgaagaaatgaaggaagac
agtttttttgaaagtatgccaaagctcgaacgggaagctccagcattcatggactctcca
gcagaaacttcttcaccggatgttgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCATCAAAATCAGCATCCCGGCT 659 145 16 Antisense
GCTATAACCTTGGCTATCCAGCACC 476 303 38 Antisense
ACAACCTCCGCCAAATTATTTCTAT 328 113 78 Antisense
AGCAAATTTAACTTGGTCACACGCC 409 75 124 Antisense
GTCACACGCCAAAATGCGGACCTCA 470 465 139 Antisense
GTTTTCAATCCAAGGGCTTCGCGAA 556 447 186 Antisense
GCTTCGCGAAGAGTTATCCGTGGCA 89 307 201 Antisense
GAAAGTATGCCAAAGCTCGAACGGG 586 359 265 Antisense
GAAGCTCCAGCATTCATGGACTCTC 355 343 289 Antisense
TGGACTCTCCAGCAGAAACTTCTTC 458 547 305 Antisense
GAAACTTCTTCACCGGATGTTGAGA 376 357 319 Antisense
Sequence Source Affymetrix Proprietary Database