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[181952_at]

Description F22G12.2 /REP_DB=WormBase Gene ID /WP=CE15889 /TR=O45396 /GB=CAB07366.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 28      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 81.4
(1.5)
A 		104.6
(3)
P 		78.2
(1.3)
A 		8.8
(-3)
A 		96
B 62.7
(3)
A 		46.1
(-0.3)
A 		56.5
(1.8)
P 		32.9
(-3)
A 		30
C 64.2
(-1.8)
A 		64.7
(-1.7)
P 		34.6
(-3)
A 		178.7
(3)
P 		144
avr 69.4
(1.6) 		71.8
(2.4) 		56.4
(-3) 		73.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 59.4
(3)
A 		55
(2.5)
A 		55.4
(2.5)
A 		7.5
(-3)
A 		58.7
(2.9)
P 		48.9
(1.8)
A 		52
B 36.4
(-1.8)
A 		36.1
(-1.8)
A 		33.3
(-2.5)
A 		57.7
(3)
A 		30.9
(-3)
A 		38.9
(-1.2)
A 		27
C 40.9
(0.8)
A 		54
(3)
A 		22.1
(-2.4)
A 		18.4
(-3)
A 		33
(-0.5)
A 		54.1
(3)
A 		36
avr 45.6
(2.2) 		48.4
(3) 		36.9
(-0.4) 		27.9
(-3) 		40.9
(0.8) 		47.3
(2.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 29.6
(3)
A 		22.7
(1.5)
P 		20.5
(1.1)
A 		1.3
(-3)
A 		28
B 20
(3)
A 		11.4
(-1)
A 		13.1
(-0.2)
P 		7
(-3)
A 		13
C 21.2
(0)
A 		18.6
(-0.8)
P 		12.1
(-3)
A 		30.1
(3)
P 		18
avr 23.6
(3) 		17.6
(-0.3) 		15.2
(-1.7) 		12.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11
(0.1)
A 		19.6
(3)
A 		12.1
(0.5)
A 		1.9
(-3)
A 		17.7
(2.4)
P 		11.9
(0.4)
A 		18
B 12.6
(0.8)
A 		12
(0.3)
A 		8.1
(-3)
A 		15.3
(3)
A 		12.5
(0.7)
A 		14.5
(2.3)
A 		7
C 15.1
(1.8)
A 		16.5
(2.3)
A 		5.6
(-2.2)
A 		3.7
(-3)
A 		10.7
(-0.1)
A 		18.1
(3)
A 		14
avr 12.9
(0.9) 		16
(3) 		8.6
(-1.9) 		7
(-3) 		13.6
(1.4) 		14.8
(2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1567
Sequence Type Exemplar sequence
Representative Public ID F22G12.2 NCBI
Target Description F22G12.2 /REP_DB=WormBase Gene ID /WP=CE15889 /TR=O45396 /GB=CAB07366.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060902 NCBI Caenorhabditis elegans F22G12.2 (F22G12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000002519 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13155607:13156815:-1 11/11 None
F22G12.2 ENSEMBL cdna:known chromosome:CEL140:I:13155607:13156815:-1 gene:F22G12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058839 4/11 Cross Hyb Matching Probes None
SNAP00000002512 7/11 Cross Hyb Matching Probes None
SNAP00000013113 1/11 Cross Hyb Matching Probes None
SNAP00000027025 2/11 Cross Hyb Matching Probes None
T03F1.4 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F22G12.2
Entrez Gene 184867 Entrez gene
SwissProt O45396 EMBL-EBI
WormBase CE15889 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07366 Hypothetical protein F22G12.2 [Caenorhabditis elegans] ref|NP_493303.1| F22G12.2 [Caenorhabditis elegans] 0.0
blast AAC46707 Hypothetical protein K02A2.6 [Caenorhabditis elegans] ref|NP_495557.1| K02A2.6 [Caenorhabditis elegans] sp|Q09575|YRD6_CAEEL Hypothetical protein K02A2.6 in chromosome II 1.0E-159
blast NP_491240 T03F1.4 [Caenorhabditis elegans] gb|AAB42240.2| Hypothetical protein T03F1.4 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 7.7E-16
Sequence
Target Sequence 
>C. ELEGANS:181952_AT
ctgttcttctcgactccaggaaagtttactagctgttcagacaataagtcacgttccggg
gccacagggggggaaactaatctttttgattcttcaggctcgtctgttaatcctagattg
tcttccgattcgtttggttttgtgggggagagtggcggtgatgagatgtcccgcagtgat
gatccagttgttacttctaccgttcccagtactgatctcaatcgtggaagccgtatcaca
agtgaactaaagaagaaagaaagcaatgcagtccgaggacagccacgtggatccagctct
accaacaacaacgactcctcagcgcccggatacgcctcacgttctcacccgaccaccgac
ccaagccattccgtacgacgaagttcgcgaattcgacgagtaccggacagatatggttca
tctgtggagcacccattaacctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTTCTTCTCGACTCCAGGAAAGT 282 239 604 Antisense
TCGACTCCAGGAAAGTTTACTAGCT 58 603 613 Antisense
GAAAGTTTACTAGCTGTTCAGACAA 320 361 623 Antisense
CAGACAATAAGTCACGTTCCGGGGC 379 141 641 Antisense
GGAAACTAATCTTTTTGATTCTTCA 38 529 675 Antisense
ATCTTTTTGATTCTTCAGGCTCGTC 436 31 683 Antisense
TGATTCTTCAGGCTCGTCTGTTAAT 261 561 690 Antisense
TACCGTTCCCAGTACTGATCTCAAT 18 651 801 Antisense
CGTTCCCAGTACTGATCTCAATCGT 538 247 804 Antisense
TCCCAGTACTGATCTCAATCGTGGA 496 597 807 Antisense
ATCTGTGGAGCACCCATTAACCTCC 84 35 1023 Antisense
Sequence Source Affymetrix Proprietary Database