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[181951_at]

Description K12H6.5 /REP_DB=WormBase Gene ID /WP=CE20008 /TR=Q9N5H1 /GB=AAF39935.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 35      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 31.8
(-1.1)
A 		64.3
(2.6)
A 		15.6
(-3)
A 		67.4
(3)
A 		52
B 47
(-0.4)
A 		103.2
(3)
A 		32.6
(-1.3)
A 		4.1
(-3)
A 		99
C 34.9
(-3)
A 		40.6
(-2.4)
A 		57.5
(-0.7)
A 		94.9
(3)
A 		60
avr 37.9
(-2.5) 		69.4
(3) 		35.2
(-3) 		55.5
(0.6) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 20
(-2)
A 		34.9
(-0.1)
A 		58.3
(3)
A 		52.6
(2.3)
A 		17.4
(-2.3)
A 		12.3
(-3)
A 		46
B 101.6
(3)
A 		61.2
(0.3)
A 		41.5
(-1)
A 		15.8
(-2.8)
A 		12.3
(-3)
A 		28.4
(-1.9)
A 		89
C 25.5
(2.3)
A 		17.5
(0.1)
A 		20.6
(1)
A 		14.3
(-0.8)
A 		27.9
(3)
A 		6.3
(-3)
A 		22
avr 49
(3) 		37.9
(1) 		40.1
(1.4) 		27.6
(-0.9) 		19.2
(-2.4) 		15.7
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 11.6
(1.5)
A 		14
(3)
A 		4.1
(-3)
A 		9.9
(0.5)
A 		10
B 15
(0.4)
A 		25.5
(3)
A 		7.6
(-1.4)
A 		0.9
(-3)
A 		25
C 11.6
(-3)
A 		11.7
(-2.9)
A 		20
(3)
A 		16
(0.1)
A 		8
avr 12.7
(-0.2) 		17.1
(3) 		10.6
(-1.8) 		8.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 3.7
(-2.6)
A 		12.4
(2.5)
A 		12.7
(2.7)
A 		13.3
(3)
A 		5.2
(-1.7)
A 		3
(-3)
A 		10
B 35.3
(3)
A 		20.4
(0.1)
A 		10.1
(-1.9)
A 		4.2
(-3)
A 		5
(-2.8)
A 		10.6
(-1.8)
A 		31
C 9.4
(3)
A 		5.3
(-0.4)
A 		5.3
(-0.4)
A 		2.9
(-2.3)
A 		9
(2.7)
A 		2.1
(-3)
A 		7
avr 16.1
(3) 		12.7
(1.1) 		9.4
(-0.7) 		6.8
(-2.1) 		6.4
(-2.3) 		5.2
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5107
Sequence Type Exemplar sequence
Representative Public ID K12H6.5 NCBI
Target Description K12H6.5 /REP_DB=WormBase Gene ID /WP=CE20008 /TR=Q9N5H1 /GB=AAF39935.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061975(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061975 NCBI Caenorhabditis elegans K12H6.5 (K12H6.5) mRNA, complete cds. 11/11 None
K12H6.5 ENSEMBL cdna:known chromosome:CEL140:II:2825764:2826597:-1 gene:K12H6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024513 8/11 Cross Hyb Matching Probes None
SNAP00000024514 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024527 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2825762-2826596(-) 87.71 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H6.5
Entrez Gene 187344 Entrez gene
SwissProt Q9N5H1 EMBL-EBI
WormBase CE20008 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494376 K12H6.5 [Caenorhabditis elegans] gb|AAF39935.1| Hypothetical protein K12H6.5 [Caenorhabditis elegans] 2.0E-83
Sequence
Target Sequence 
>C. ELEGANS:181951_AT
atgattgtaacgcctggattcccgattctcagcaacggagaggacaacgagtgccaggat
aatagcaacgattctcattgttgtctccctataaatcatcccacacaccgccaccatcct
catcatccaacgatgacctcctcgacaaccatccttcttcttctggctctggtgggcttc
tcctccggatcctacatgtcgcaggaaaactctgcaaagctggctcaactccacctcaat
atggtgctcctggcctcaagctctcatgaatatggaatgctttacgagttgattccaaga
ggatatgacattgacagattcctgcaagaccatccaaattccatcacaaaagtcaccgtc
gagcaaatgcaacccagagagcacatgatgcctcttgcctctttcgagactgtcaatgga
caaaagttctacgcaatgttcaagctcactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTGTAACGCCTGGATTCCCGA 438 47 64 Antisense
GGATTCCCGATTCTCAGCAACGGAG 56 509 79 Antisense
TGTTGTCTCCCTATAAATCATCCCA 618 563 142 Antisense
AACTCTGCAAAGCTGGCTCAACTCC 600 141 271 Antisense
AACTCCACCTCAATATGGTGCTCCT 643 141 290 Antisense
CTGGCCTCAAGCTCTCATGAATATG 225 241 313 Antisense
GATTCCTGCAAGACCATCCAAATTC 619 433 380 Antisense
GTCACCGTCGAGCAAATGCAACCCA 618 465 415 Antisense
AGAGAGCACATGATGCCTCTTGCCT 541 69 439 Antisense
CTTGCCTCTTTCGAGACTGTCAATG 247 219 457 Antisense
TCTACGCAATGTTCAAGCTCACTCC 479 613 491 Antisense
Sequence Source Affymetrix Proprietary Database