[Home] | [Total List]

[181949_s_at]

Description C34B2.5 /REP_DB=WormBase Gene ID /WP=CE16893 /TR=O44951 /GB=AAB97537.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 75      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 83      6grp_total > 65      4grp_total > 09      6grp_highest_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 606
1 2 3 4 range
A 366.7
(-3)
P 		494.6
(-1.6)
P 		407.2
(-2.5)
P 		905.9
(3)
P 		539
B 299.8
(-3)
P 		352.7
(-2.3)
P 		326.2
(-2.7)
P 		763.1
(3)
P 		463
C 309.2
(-3)
P 		342.9
(-2.6)
P 		425.6
(-1.6)
P 		795.7
(3)
P 		487
avr 325.2
(-3) 		396.7
(-2.1) 		386.3
(-2.3) 		821.6
(3) 		496

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 438.2
(-2.1)
P 		384.8
(-3)
P 		562
(0)
P 		581.7
(0.3)
P 		414.1
(-2.5)
P 		738.2
(3)
P 		353
B 445.2
(-2)
P 		391.2
(-3)
P 		701.4
(3)
P 		469.1
(-1.5)
P 		494.8
(-1)
P 		687.7
(2.7)
P 		310
C 355.6
(-3)
P 		415.5
(-2.3)
P 		532.9
(-0.8)
P 		428.9
(-2.1)
P 		542.5
(-0.7)
P 		844
(3)
P 		488
avr 413
(-2.7) 		397.2
(-3) 		598.8
(0.4) 		493.2
(-1.4) 		483.8
(-1.6) 		756.6
(3) 		359
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 133.5
(3)
P 		107.4
(-2.8)
P 		106.4
(-3)
P 		132.6
(2.8)
P 		27
B 95.6
(-1.6)
P 		87.1
(-2.2)
P 		75.6
(-3)
P 		162.6
(3)
P 		87
C 102.3
(-2.6)
P 		98.6
(-3)
P 		148.3
(3)
P 		134.2
(1.3)
P 		50
avr 110.5
(-1.3) 		97.7
(-3) 		110.1
(-1.4) 		143.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 80.8
(-3)
P 		136.8
(0.4)
P 		122.4
(-0.5)
P 		147.5
(1)
P 		125
(-0.3)
P 		179.7
(3)
P 		99
B 154.9
(-1.6)
P 		130.2
(-2.7)
P 		170.3
(-0.9)
P 		124.3
(-3)
P 		201
(0.5)
P 		256.4
(3)
P 		132
C 131.8
(-1.6)
P 		126.8
(-1.8)
P 		135.6
(-1.5)
P 		86.3
(-3)
P 		175.5
(-0.3)
P 		282.6
(3)
P 		196
avr 122.5
(-2.8) 		131.3
(-2.4) 		142.8
(-1.8) 		119.4
(-3) 		167.2
(-0.6) 		239.6
(3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181949_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2238
Sequence Type Exemplar sequence
Representative Public ID C34B2.5 NCBI
Target Description C34B2.5 /REP_DB=WormBase Gene ID /WP=CE16893 /TR=O44951 /GB=AAB97537.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060394 NCBI Caenorhabditis elegans C34B2.5 (C34B2.5) mRNA, complete cds. 11/11 None
SNAP00000007244 ENSEMBL cdna:SNAP chromosome:CEL140:I:10683399:10684924:-1 11/11 None
GENEFINDER00000007261 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10683399:10684924:-1 11/11 None
C34B2.5 ENSEMBL cdna:known chromosome:CEL140:I:10683305:10684932:-1 gene:C34B2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10683329-10684855(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34B2.5
Entrez Gene 172965 Entrez gene
SwissProt O44951 EMBL-EBI
WormBase CE16893 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253633_AT tetratricopeptide repeat (TPR)-containing protein at
CANINE:1583175_AT similar to Tetratricopeptide repeat protein 1 (TPR repeat protein 1) cfa
CANINE_2:CFA.741.1.A1_AT similar to Tetratricopeptide repeat protein 1 (TPR repeat protein 1) cfa
CANINE_2:CFAAFFX.26433.1.S1_S_AT similar to Tetratricopeptide repeat protein 1 (TPR repeat protein 1) cfa
DROSOPHILA_2:1624614_AT dm
DROSGENOME1:150015_AT dm
CHICKEN:GGA.12210.1.S1_AT tetratricopeptide repeat domain 1 gga
HG-U133_PLUS_2:201434_AT tetratricopeptide repeat domain 1 hs
HG-U133A:201434_AT tetratricopeptide repeat domain 1 hs
HG-FOCUS:201434_AT tetratricopeptide repeat domain 1 hs
HG-U133A_2:201434_AT tetratricopeptide repeat domain 1 hs
HUGENEFL:U46570_AT tetratricopeptide repeat domain 1 hs
U133_X3P:G4507710_3P_AT tetratricopeptide repeat domain 1 hs
HG-U95AV2:37321_AT tetratricopeptide repeat domain 1 hs
HG-U95E:80398_AT tetratricopeptide repeat domain 1 hs
HG-U95D:68824_AT Tetratricopeptide repeat domain 1 hs
HG-U95D:69388_AT Tetratricopeptide repeat domain 1 hs
HG-U95E:87231_AT Tetratricopeptide repeat domain 1 hs
HU35KSUBA:W04902_AT Tetratricopeptide repeat domain 1 hs
HU35KSUBB:RC_R14894_AT Tetratricopeptide repeat domain 1 hs
MU11KSUBA:C79328_RC_G_AT tetratricopeptide repeat domain 1 mm
MU11KSUBA:C79328_RC_AT tetratricopeptide repeat domain 1 mm
MG-U74AV2:96921_AT tetratricopeptide repeat domain 1 mm
MG-U74AV2:161887_R_AT tetratricopeptide repeat domain 1 mm
MG-U74CV2:168432_I_AT tetratricopeptide repeat domain 1 mm
MOE430A:1448537_AT tetratricopeptide repeat domain 1 mm
MOUSE430A_2:1448537_AT tetratricopeptide repeat domain 1 mm
MOUSE430_2:1448537_AT tetratricopeptide repeat domain 1 mm
MOE430A:1416994_AT tetratricopeptide repeat domain 1 mm
MOUSE430A_2:1416994_AT tetratricopeptide repeat domain 1 mm
MOUSE430_2:1416994_AT tetratricopeptide repeat domain 1 mm
MU19KSUBA:TC15222_AT Tetratricopeptide repeat domain 1 (Ttc1), mRNA mm
RG-U34C:RC_AI146071_AT tetratricopeptide repeat domain 1 rn
RAE230A:1372712_AT tetratricopeptide repeat domain 1 rn
RAT230_2:1372712_AT tetratricopeptide repeat domain 1 rn
RAE230B:1381119_AT tetratricopeptide repeat domain 1 rn
RAT230_2:1381119_AT tetratricopeptide repeat domain 1 rn
Protein Similarities
Method ID Description E-Value
blast AAB97537 Hypothetical protein C34B2.5 [Caenorhabditis elegans] ref|NP_492795.1| C34B2.5 [Caenorhabditis elegans] 1.0E-103
blast CAE67339 Hypothetical protein CBG12801 [Caenorhabditis briggsae] 4.0E-80
blast AAF55314 CG14894-PA [Drosophila melanogaster] ref|NP_650543.1| CG14894-PA [Drosophila melanogaster] gb|AAX33517.1| LP07287p [Drosophila melanogaster] 4.0E-24
Sequence
Target Sequence 
>C. ELEGANS:181949_S_AT
atatcaggaagccattgcctcgtgccctccaacatccacagaagtacaatcgattcttct
ttcaaattcagcagctgcacttatcaagttaagaaaatgggaatctgctgtggaagctgc
gtcgaaatcaattgagattggagcaaccaacgagaaagcactggaacgacgggcgtttgc
atactcgaatatgtcagaaaagtatgagaattctattgaagattataaacagttacagga
atctcttccaaaacgccgcgtcgaacttgatcggaaaatcgctgaaatcaatgagaaaat
taataatcgaaatgaggcgatgaaagccgatgtgatggaaaaactgaagggtttcggaaa
tttctgtctatcgccgtttgggctctcgacagacagttttgagatggtcccgaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCAGGAAGCCATTGCCTCGTGC 343 19 132 Antisense
GATTCTTCTTTCAAATTCAGCAGCT 593 429 183 Antisense
TTCAGCAGCTGCACTTATCAAGTTA 343 687 198 Antisense
GAATCTGCTGTGGAAGCTGCGTCGA 417 329 232 Antisense
GAGAAAGCACTGGAACGACGGGCGT 132 389 283 Antisense
ACGACGGGCGTTTGCATACTCGAAT 82 93 297 Antisense
ACAGGAATCTCTTCCAAAACGCCGC 402 107 366 Antisense
AAACGCCGCGTCGAACTTGATCGGA 694 125 382 Antisense
GTTTCGGAAATTTCTGTCTATCGCC 257 451 482 Antisense
TTGGGCTCTCGACAGACAGTTTTGA 506 707 509 Antisense
ACAGTTTTGAGATGGTCCCGAATGG 488 95 524 Antisense
Sequence Source Affymetrix Proprietary Database