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[181948_at] 7TM chemoreceptor, srb family

Description F58A6.6 /REP_DB=WormBase Gene ID /WP=CE04679 /TR=Q20961 /GB=AAA96201.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 38      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 184.6
(3)
P 		146.8
(-0.1)
A 		112.4
(-3)
A 		158.4
(0.8)
P 		72
B 290
(3)
P 		147.1
(-1.6)
A 		101.9
(-3)
A 		149.9
(-1.5)
P 		188
C 232.9
(3)
P 		170.9
(0.6)
A 		75.3
(-3)
A 		149.9
(-0.2)
P 		158
avr 235.8
(3) 		154.9
(-0.5) 		96.5
(-3) 		152.7
(-0.6) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 230.4
(3)
P 		150.2
(0.2)
P 		193
(1.7)
P 		60.5
(-3)
A 		103.7
(-1.5)
A 		83.5
(-2.2)
A 		170
B 106.4
(-3)
P 		194.5
(0.4)
P 		263.7
(3)
P 		149.3
(-1.4)
P 		129.3
(-2.1)
M 		106.2
(-3)
A 		158
C 117.9
(-1.2)
P 		251.1
(3)
P 		115.9
(-1.2)
A 		92.3
(-1.9)
P 		58.6
(-3)
A 		79.6
(-2.3)
A 		193
avr 151.6
(0.4) 		198.6
(3) 		190.9
(2.6) 		100.7
(-2.4) 		97.2
(-2.6) 		89.8
(-3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 67.2
(3)
P 		31.9
(-1.8)
A 		29.4
(-2.2)
A 		23.2
(-3)
P 		44
B 92.5
(3)
P 		36.3
(-1.9)
A 		23.6
(-3)
A 		32
(-2.3)
P 		69
C 77.1
(3)
P 		49.1
(-0.2)
A 		26.2
(-2.9)
A 		25.3
(-3)
P 		52
avr 78.9
(3) 		39.1
(-1.5) 		26.4
(-3) 		26.8
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 42.5
(1.3)
P 		53.4
(3)
P 		42
(1.2)
P 		15.4
(-3)
A 		31.3
(-0.5)
A 		20.3
(-2.2)
A 		38
B 37
(-3)
P 		64.7
(3)
P 		64
(2.8)
P 		39.5
(-2.5)
P 		52.5
(0.4)
M 		39.6
(-2.4)
A 		28
C 43.7
(-0.4)
P 		76.6
(3)
P 		29.5
(-1.9)
A 		18.6
(-3)
P 		19
(-3)
A 		26.7
(-2.2)
A 		58
avr 41.1
(-0.5) 		64.9
(3) 		45.2
(0.1) 		24.5
(-3) 		34.3
(-1.5) 		28.9
(-2.3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5434
Sequence Type Exemplar sequence
Representative Public ID F58A6.6 NCBI
Target Description F58A6.6 /REP_DB=WormBase Gene ID /WP=CE04679 /TR=Q20961 /GB=AAA96201.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062555 NCBI Caenorhabditis elegans Serpentine Receptor, class B (beta) family member (srb-16) (srb-16) mRNA, complete cds. 11/11 None
GENEFINDER00000019954 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5148557:5150798:-1 11/11 None
F58A6.6 ENSEMBL cdna:known chromosome:CEL140:II:5148557:5150835:-1 gene:F58A6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019948 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5148554-5150796(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srb family
Gene Symbol srb-16
Ensembl F58A6.6
Entrez Gene 186489 Entrez gene
SwissProt Q20961 EMBL-EBI
WormBase CE04679 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96201 Serpentine receptor, class b (beta) protein 16 [Caenorhabditis elegans] ref|NP_494956.1| Serpentine Receptor, class B (beta) family member (srb-16) [Caenorhabditis elegans] 1.0E-174
blast CAE59052 Hypothetical protein CBG02335 [Caenorhabditis briggsae] 1.0E-157
blast CAE63831 Hypothetical protein CBG08385 [Caenorhabditis briggsae] 4.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494956.1 7 20-42,63-82,102-124,145-164,189-211,238-260,280-301
F58A6.6 7 20-42,63-82,102-124,145-164,189-211,238-260,280-301
GENEFINDER00000019954 7 20-42,63-82,102-124,145-164,189-211,238-260,280-301
Sequence
Target Sequence 
>C. ELEGANS:181948_AT
cgagcacaacacttcattttggcatattcttgcttacttatttttctgtattgtattacc
cctctctctacttgtttgggcttaccaagacgctgattataactcgccagttatcactgc
aatcagtccgccaaaaggtgtggaaattagactcaacattctctacattttctgtttttt
cttggctattctagcacttattttgcttcaggttgttcgatttgtaaataaacggagaga
gagcagaatagaaataagtttatcgggaagatttcaaattgttgaaaacattgacacaac
cacatttatctcatcaattttgataataaatatgataatgtctgtgatctacattgtggg
aacatttacgctcagaaactttcaatttgatgcttttatcaataatcagccagcattggc
tactgtcaaaactatattttatctgcacccgttgttttccttcctaatgccacttatatc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCACAACACTTCATTTTGGCAT 243 247 420 Antisense
TATTCTTGCTTACTTATTTTTCTGT 542 663 444 Antisense
TTTTCTGTATTGTATTACCCCTCTC 4 677 461 Antisense
CCCTCTCTCTACTTGTTTGGGCTTA 625 257 479 Antisense
AGACGCTGATTATAACTCGCCAGTT 468 69 507 Antisense
GTTATCACTGCAATCAGTCCGCCAA 526 447 529 Antisense
TTTCTGTTTTTTCTTGGCTATTCTA 620 671 588 Antisense
CACTTATTTTGCTTCAGGTTGTTCG 212 195 614 Antisense
GACACAACCACATTTATCTCATCAA 282 367 712 Antisense
ATATTTTATCTGCACCCGTTGTTTT 475 19 853 Antisense
TTCCTTCCTAATGCCACTTATATCA 660 695 876 Antisense
Sequence Source Affymetrix Proprietary Database