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[181947_s_at]

Description C03H5.1 /REP_DB=WormBase Gene ID /WP=CE07894 /TR=O16660 /GB=AAB66126.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      6grp_highest_nonorm > 61      6grp_total > 31      4grp_total > 59      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1094
1 2 3 4 range
A 557.6
(0.5)
P 		949.4
(3)
P 		722.4
(1.6)
P 		4
(-3)
A 		945
B 707.5
(0.9)
P 		879.9
(1.8)
P 		1097.7
(3)
P 		7.4
(-3)
A 		1090
C 613.8
(0.6)
P 		962
(2.8)
P 		995.8
(3)
P 		52.4
(-3)
A 		943
avr 626.3
(1) 		930.4
(2.9) 		938.6
(3) 		21.3
(-3) 		917

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 869
1 2 3 4 5 6 range
A 275.4
(-1)
P 		601.1
(2.3)
P 		676.1
(3)
P 		350
(-0.3)
P 		305.9
(-0.7)
P 		75.2
(-3)
P 		601
B 480.9
(-0.4)
P 		508.9
(-0.2)
P 		944.1
(3)
P 		328.2
(-1.5)
P 		255.1
(-2.1)
P 		130.3
(-3)
P 		814
C 375.7
(0.1)
P 		547.5
(2.1)
P 		617.5
(3)
P 		367
(-0)
P 		291
(-1)
P 		123.7
(-3)
P 		494
avr 377.3
(-0.5) 		552.5
(1.2) 		745.9
(3) 		348.4
(-0.7) 		284
(-1.4) 		109.7
(-3) 		636
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 203
(2.9)
P 		206.1
(3)
P 		188.8
(2.5)
P 		0.6
(-3)
A 		206
B 225.6
(2.3)
P 		217.3
(2.1)
P 		254.4
(3)
P 		1.6
(-3)
A 		253
C 203.2
(0.4)
P 		276.6
(1.7)
P 		347.1
(3)
P 		8.8
(-3)
A 		338
avr 210.6
(1.8) 		233.3
(2.3) 		263.4
(3) 		3.7
(-3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 50.8
(-2)
P 		213.8
(3)
P 		147.2
(1)
P 		88.8
(-0.8)
P 		92.3
(-0.7)
P 		18.3
(-3)
P 		196
B 167.3
(0.9)
P 		169.4
(1)
P 		229.3
(3)
P 		86.9
(-1.7)
P 		103.7
(-1.2)
P 		48.6
(-3)
P 		181
C 139.3
(1.7)
P 		167.1
(3)
P 		157.2
(2.5)
P 		73.8
(-1.5)
P 		94.2
(-0.5)
P 		41.4
(-3)
P 		126
avr 119.1
(0.4) 		183.4
(3) 		177.9
(2.8) 		83.2
(-1.1) 		96.7
(-0.5) 		36.1
(-3) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181947_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4742
Sequence Type Exemplar sequence
Representative Public ID C03H5.1 NCBI
Target Description C03H5.1 /REP_DB=WormBase Gene ID /WP=CE07894 /TR=O16660 /GB=AAB66126.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061324 NCBI Caenorhabditis elegans C-type LECtin family member (clec-10) (clec-10) mRNA, complete cds. 11/11 A 
SNAP00000020970 ENSEMBL cdna:SNAP chromosome:CEL140:II:402681:405065:1 11/11 None
GENEFINDER00000020976 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:402681:404030:1 11/11 None
C03H5.1 ENSEMBL cdna:known chromosome:CEL140:II:402659:404227:1 gene:C03H5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:401242-404115(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-10
Ensembl C03H5.1
Entrez Gene 173430 Entrez gene
SwissProt O16660 EMBL-EBI
WormBase CE32109 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66126 C-type lectin protein 10 [Caenorhabditis elegans] ref|NP_493725.2| C-type LECtin family member (clec-10) [Caenorhabditis elegans] 0.0
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-115
blast CAA20940 Hypothetical protein H16D19.1 [Caenorhabditis elegans] emb|CAB04713.1| Hypothetical protein T07D10.4 [Caenorhabditis elegans] ref|NP_493197.1| C-type LECtin family member (clec-13) [Caenorhabditis elegans] ref|NP_493196.1| C-type LECtin family member (clec-15) [Caenorhabditis elegans] 1.0E-110
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-108
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.6E-10
Pfam IPR001304 EMBL-EBI C-type lectin 9.1E-6
Pfam IPR000859 EMBL-EBI CUB 1.3E-23
Pfam IPR000859 EMBL-EBI CUB 2.3E-13
Pfam IPR000859 EMBL-EBI CUB 2.9E-13
Sequence
Target Sequence 
>C. ELEGANS:181947_S_AT
gataacaacgaggattgcacttaccttatttccacattggggccctacggaatatttttg
ttcattgcaccatttagtacggaacacaagtatgatgttgtgaccatttacgatggccca
acaacaagccacaaagttttggctcatttaagcggagaaattggtatttctatgatgact
tca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAACAACGAGGATTGCACTTACC 470 421 1210 Antisense
ATTGCACTTACCTTATTTCCACATT 607 5 1223 Antisense
CACTTACCTTATTTCCACATTGGGG 231 195 1227 Antisense
TTCCACATTGGGGCCCTACGGAATA 548 695 1239 Antisense
GGCCCTACGGAATATTTTTGTTCAT 521 541 1250 Antisense
ATTTTTGTTCATTGCACCATTTAGT 449 15 1263 Antisense
GCACCATTTAGTACGGAACACAAGT 576 235 1276 Antisense
GTATGATGTTGTGACCATTTACGAT 232 453 1299 Antisense
GGCCCAACAACAAGCCACAAAGTTT 543 539 1324 Antisense
AAGTTTTGGCTCATTTAAGCGGAGA 100 137 1343 Antisense
AATTGGTATTTCTATGATGACTTCA 513 179 1368 Antisense
Sequence Source Affymetrix Proprietary Database