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[181946_at]

Description C03H5.1 /REP_DB=WormBase Gene ID /WP=CE07894 /TR=O16660 /GB=AAB66126.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 32      6grp_total > 21      4grp_total > 59      6grp_cgc > 72      6grp_high1_sub > 02_03      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 977
1 2 3 4 range
A 531.6
(0.2)
P 		952.8
(2.8)
P 		983.2
(3)
P 		6.7
(-3)
A 		977
B 550.6
(0.8)
P 		867.4
(3)
P 		721.4
(2)
P 		8.8
(-3)
A 		859
C 402.4
(-0.2)
P 		840.6
(3)
P 		836.2
(3)
P 		28.3
(-3)
A 		812
avr 494.9
(0.3) 		886.9
(3) 		846.9
(2.7) 		14.6
(-3) 		872

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 350.6
(-0.5)
P 		526
(1.1)
P 		725.3
(3)
P 		449.5
(0.4)
P 		298.4
(-1)
P 		91.4
(-3)
A 		634
B 313.2
(-0.8)
P 		723.2
(3)
P 		646
(2.3)
P 		272.7
(-1.2)
P 		319.8
(-0.8)
P 		82.3
(-3)
P 		641
C 394
(-0)
P 		710
(3)
P 		634.8
(2.3)
P 		319
(-0.7)
P 		223.7
(-1.6)
P 		82.1
(-3)
A 		628
avr 352.6
(-0.3) 		653.1
(2.8) 		668.7
(3) 		347.1
(-0.3) 		280.6
(-1) 		85.3
(-3) 		583
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 193.6
(1.5)
P 		206.8
(1.8)
P 		257
(3)
P 		1
(-3)
A 		256
B 175.6
(1.9)
P 		214.2
(3)
P 		167.2
(1.7)
P 		1.9
(-3)
A 		212
C 133.2
(-0.3)
P 		241.7
(2)
P 		291.5
(3)
P 		4.8
(-3)
A 		287
avr 167.5
(1.2) 		220.9
(2.6) 		238.6
(3) 		2.6
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 64.6
(-1.5)
P 		187.1
(3)
P 		158
(1.9)
P 		114
(0.3)
P 		90
(-0.5)
P 		22.3
(-3)
A 		165
B 109
(-0.8)
P 		240.7
(3)
P 		156.9
(0.6)
P 		72.2
(-1.8)
P 		129.9
(-0.2)
P 		30.7
(-3)
P 		210
C 146
(0.8)
P 		216.6
(3)
P 		161.6
(1.3)
P 		64.1
(-1.8)
P 		72.4
(-1.6)
P 		27.5
(-3)
A 		189
avr 106.5
(-0.5) 		214.8
(3) 		158.8
(1.2) 		83.4
(-1.2) 		97.4
(-0.7) 		26.8
(-3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4742
Sequence Type Exemplar sequence
Representative Public ID C03H5.1 NCBI
Target Description C03H5.1 /REP_DB=WormBase Gene ID /WP=CE07894 /TR=O16660 /GB=AAB66126.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061324 NCBI Caenorhabditis elegans C-type LECtin family member (clec-10) (clec-10) mRNA, complete cds. 11/11 A 
SNAP00000020970 ENSEMBL cdna:SNAP chromosome:CEL140:II:402681:405065:1 11/11 None
GENEFINDER00000020976 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:402681:404030:1 11/11 None
C03H5.1 ENSEMBL cdna:known chromosome:CEL140:II:402659:404227:1 gene:C03H5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:401242-404115(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-10
Ensembl C03H5.1
Entrez Gene 173430 Entrez gene
SwissProt O16660 EMBL-EBI
WormBase CE32109 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66126 C-type lectin protein 10 [Caenorhabditis elegans] ref|NP_493725.2| C-type LECtin family member (clec-10) [Caenorhabditis elegans] 0.0
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-115
blast CAA20940 Hypothetical protein H16D19.1 [Caenorhabditis elegans] emb|CAB04713.1| Hypothetical protein T07D10.4 [Caenorhabditis elegans] ref|NP_493197.1| C-type LECtin family member (clec-13) [Caenorhabditis elegans] ref|NP_493196.1| C-type LECtin family member (clec-15) [Caenorhabditis elegans] 1.0E-110
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-108
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.6E-10
Pfam IPR001304 EMBL-EBI C-type lectin 9.1E-6
Pfam IPR000859 EMBL-EBI CUB 1.3E-23
Pfam IPR000859 EMBL-EBI CUB 2.3E-13
Pfam IPR000859 EMBL-EBI CUB 2.9E-13
Sequence
Target Sequence 
>C. ELEGANS:181946_AT
cttgtgtctatacattctccgaatgaacttcagtatattgttaactttgctccatttgtg
gacgacggttactttattggagcgacatggaaaaataactacagcctcagttggctggat
gattctccgtgggactacgatagaattgatccatcattttcagttaaagttggctattgc
tttacgatatacactggtgtgggctctaaaatcactggttcctggtacagcgttgacaat
tgggaaattcctaatcagtatatatgcaagatacctgctggtgttccatgctcgcctgca
ccaccagtaactcccacaccaaacttatcaaattgcaacggaccgcgaatgatgtattca
ggagttttcacctctccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTGTCTATACATTCTCCGAATG 517 217 814 Antisense
GTGGACGACGGTTACTTTATTGGAG 131 491 871 Antisense
GCCTCAGTTGGCTGGATGATTCTCC 294 281 917 Antisense
GATGATTCTCCGTGGGACTACGATA 107 409 931 Antisense
GTTGGCTATTGCTTTACGATATACA 81 437 982 Antisense
GGGCTCTAAAATCACTGGTTCCTGG 159 493 1014 Antisense
CACTGGTTCCTGGTACAGCGTTGAC 612 197 1026 Antisense
AAGATACCTGCTGGTGTTCCATGCT 641 153 1081 Antisense
ACTCCCACACCAAACTTATCAAATT 558 99 1123 Antisense
GCAACGGACCGCGAATGATGTATTC 192 321 1148 Antisense
ATTCAGGAGTTTTCACCTCTCCAAA 463 9 1169 Antisense
Sequence Source Affymetrix Proprietary Database