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[181945_s_at]

Description F39E9.2 /REP_DB=WormBase Gene ID /WP=CE20760 /TR=O17112 /GB=AAB70369.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 26.9
(-2)
A 		104.1
(3)
A 		11
(-3)
A 		67.4
(0.6)
A 		93
B 56.1
(2.1)
A 		55.4
(1.9)
A 		59.1
(3)
A 		38.8
(-3)
A 		20
C 102.5
(3)
A 		52.9
(-1.1)
A 		29.5
(-3)
A 		84.6
(1.5)
A 		73
avr 61.8
(1.6) 		70.8
(3) 		33.2
(-3) 		63.6
(1.9) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 29.3
(-1.1)
A 		49
(0.7)
A 		75
(3)
A 		30.5
(-1)
A 		58.4
(1.5)
A 		8.2
(-3)
A 		67
B 71.7
(1.3)
A 		93.9
(2.8)
A 		96.6
(3)
A 		43.2
(-0.7)
A 		10.6
(-3)
A 		36.4
(-1.2)
A 		86
C 41.4
(-1.2)
A 		80.1
(3)
A 		64.9
(1.3)
A 		58.1
(0.6)
A 		25.2
(-3)
A 		50.9
(-0.2)
A 		55
avr 47.5
(-1) 		74.3
(2.4) 		78.8
(3) 		43.9
(-1.4) 		31.4
(-3) 		31.8
(-2.9) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 9.8
(-0.9)
A 		22.6
(3)
A 		2.9
(-3)
A 		9.9
(-0.9)
A 		20
B 17.9
(3)
A 		13.7
(0.4)
A 		13.7
(0.4)
A 		8.3
(-3)
A 		10
C 33.9
(3)
A 		15.2
(-1.8)
A 		10.3
(-3)
A 		14.3
(-2)
A 		24
avr 20.5
(3) 		17.2
(1.3) 		9
(-3) 		10.8
(-2.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 5.4
(-1.7)
A 		17.4
(2.9)
A 		16.3
(2.5)
A 		7.7
(-0.8)
A 		17.6
(3)
A 		2
(-3)
A 		16
B 24.9
(1.6)
A 		31.3
(3)
A 		23.4
(1.2)
A 		11.4
(-1.4)
A 		4.3
(-3)
A 		13.6
(-0.9)
A 		27
C 15.4
(-0.3)
A 		24.4
(3)
A 		16.5
(0.1)
A 		11.7
(-1.7)
A 		8.2
(-3)
A 		17
(0.3)
A 		16
avr 15.2
(-0.8) 		24.4
(3) 		18.7
(0.6) 		10.3
(-2.9) 		10
(-3) 		10.9
(-2.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181945_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4044
Sequence Type Exemplar sequence
Representative Public ID F39E9.2 NCBI
Target Description F39E9.2 /REP_DB=WormBase Gene ID /WP=CE20760 /TR=O17112 /GB=AAB70369.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182266 NCBI Caenorhabditis elegans F39E9.12 (F39E9.12) mRNA, complete cds. 11/11 None
SNAP00000020868 ENSEMBL cdna:SNAP chromosome:CEL140:II:3299821:3300672:1 11/11 None
GENEFINDER00000020874 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3298560:3300672:1 11/11 None
F39E9.12 ENSEMBL cdna:known chromosome:CEL140:II:3298391:3300672:1 gene:F39E9.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3295429-3300671(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39E9.12
Entrez Gene 353391 Entrez gene
SwissProt Q8ITZ1 EMBL-EBI
WormBase CE32654 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAN65318 Hypothetical protein F39E9.12 [Caenorhabditis elegans] ref|NP_872066.1| F39E9.12 [Caenorhabditis elegans] 0.0
blast H88094 protein F39E9.2 [imported] - Caenorhabditis elegans 0.0
blast AAN65318 Hypothetical protein F39E9.12 [Caenorhabditis elegans] ref|NP_872066.1| F39E9.12 [Caenorhabditis elegans] 1.0E-133
blast H88094 protein F39E9.2 [imported] - Caenorhabditis elegans 1.0E-133
blast AAN65319 Hypothetical protein F39E9.2 [Caenorhabditis elegans] ref|NP_494499.2| F39E9.2 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.8E-28
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.0E-32
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.0E-32
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.8E-28
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.0E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872066.1 2 304-322,329-351
F39E9.12 2 304-322,329-351
SNAP00000020868 2 4-22,29-51
GENEFINDER00000020874 2 244-262,269-291
Sequence
Target Sequence 
>C. ELEGANS:181945_S_AT
aattgctgtaatcttttacccgcctcttaccacgtatttctggttttggataaaagatgt
cgctgaagtcgtttttgaatacgcccttattccatggaattttctattccaaccatccta
tgaggacgaatttcttccatgcgaaaaacacgatgcggtactagtgattggaaaaaggaa
aatacatgttaataaagcgttcctttcctaccactcggactattttcgggcgttgttctc
ttccagttttaaggaaaatgaacagaatgagattgaactgaaagatgttgtctatgggga
ttttgagctattgatgagcacgatttacccaaaacccgtgtttcctaccgaccggactgt
taaaaagcttttagtaatggcggatcgtttcatggtgcattccgccatcgatcatgttga
gcatcatttacttcacaattcacgtattgcaaatgagagtatgatttggatggctgacaa
gtacggaatgaagcagcttctgaaaaagtctatcaaagaaatagattctcttcccaaggt
gaaaatattgaaggattctccattgttcccgagtatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCTGTAATCTTTTACCCGCCT 215 171 2937 Antisense
GCCTCTTACCACGTATTTCTGGTTT 460 281 2958 Antisense
GATGTCGCTGAAGTCGTTTTTGAAT 342 409 2992 Antisense
TTGAATACGCCCTTATTCCATGGAA 51 685 3011 Antisense
ATTTTCTATTCCAACCATCCTATGA 59 15 3035 Antisense
TGAGGACGAATTTCTTCCATGCGAA 58 565 3057 Antisense
GGACTATTTTCGGGCGTTGTTCTCT 550 523 3153 Antisense
TGAGCACGATTTACCCAAAACCCGT 624 565 3251 Antisense
CCGCCATCGATCATGTTGAGCATCA 225 261 3338 Antisense
GAAATAGATTCTCTTCCCAAGGTGA 286 359 3454 Antisense
GATTCTCCATTGTTCCCGAGTATGT 324 431 3490 Antisense
Sequence Source Affymetrix Proprietary Database