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[181944_at]

Description F37C4.2 /REP_DB=WormBase Gene ID /WP=CE17045 /TR=O44403 /GB=AAB95168.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 46      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 124
(3)
P 		83.7
(0.1)
A 		59.5
(-1.7)
A 		41.6
(-3)
A 		82
B 106.1
(3)
P 		82.9
(1)
A 		45.2
(-2.3)
A 		37.8
(-3)
A 		68
C 156.6
(3)
P 		55.7
(-1.3)
A 		27.6
(-2.4)
A 		14.4
(-3)
A 		142
avr 128.9
(3) 		74.1
(-0.4) 		44.1
(-2.2) 		31.3
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 97.6
(3)
A 		83.6
(2)
A 		42.3
(-1.1)
A 		55.6
(-0.1)
A 		89.6
(2.4)
A 		16.1
(-3)
A 		82
B 66.9
(0.7)
A 		100.5
(3)
M 		53.2
(-0.2)
A 		30.8
(-1.7)
A 		18.6
(-2.5)
A 		11.6
(-3)
A 		89
C 53.2
(-0.2)
A 		102.4
(3)
A 		40.9
(-1)
A 		84.8
(1.9)
A 		10.8
(-2.9)
A 		10
(-3)
A 		92
avr 72.6
(1.3) 		95.5
(3) 		45.5
(-0.6) 		57.1
(0.2) 		39.7
(-1) 		12.6
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 45.2
(3)
P 		18.2
(-1.1)
A 		15.5
(-1.6)
A 		6.1
(-3)
A 		39
B 33.8
(3)
P 		20.5
(-0.1)
A 		10.5
(-2.4)
A 		8
(-3)
A 		26
C 51.9
(3)
P 		16
(-1.4)
A 		9.6
(-2.1)
A 		2.4
(-3)
A 		50
avr 43.6
(3) 		18.2
(-1) 		11.9
(-2) 		5.5
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18
(0.3)
A 		29.7
(3)
A 		9.2
(-1.8)
A 		14.1
(-0.6)
A 		27
(2.4)
A 		3.9
(-3)
A 		26
B 23.3
(0.9)
A 		33.5
(3)
M 		12.9
(-1.2)
A 		8.2
(-2.2)
A 		7.5
(-2.3)
A 		4.3
(-3)
A 		29
C 19.7
(0.5)
A 		31.2
(3)
A 		10.4
(-1.5)
A 		17.1
(-0)
A 		3.5
(-3)
A 		3.4
(-3)
A 		28
avr 20.3
(0.6) 		31.5
(3) 		10.8
(-1.5) 		13.1
(-1) 		12.7
(-1.1) 		3.9
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10568
Sequence Type Exemplar sequence
Representative Public ID F37C4.2 NCBI
Target Description F37C4.2 /REP_DB=WormBase Gene ID /WP=CE17045 /TR=O44403 /GB=AAB95168.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068031 NCBI Caenorhabditis elegans F37C4.2 (F37C4.2) mRNA, complete cds. 11/11 None
SNAP00000038138 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3885663:3888745:1 11/11 None
F37C4.2 ENSEMBL cdna:known chromosome:CEL140:IV:3885659:3888830:1 gene:F37C4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3885590-3888751(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37C4.2
Entrez Gene 185418 Entrez gene
SwissProt Q86MF6 EMBL-EBI
WormBase CE33638 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 0.0
blast T32572 hypothetical protein F37C4.2 - Caenorhabditis elegans 0.0
blast AAB95169 Hypothetical protein F37C4.3 [Caenorhabditis elegans] ref|NP_500431.1| F37C4.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500432.3 8 20-42,80-99,139-161,176-198,265-287,312-334,341-363,368-390
F37C4.2 8 20-42,80-99,139-161,176-198,265-287,312-334,341-363,368-390
SNAP00000038138 8 20-42,80-99,139-161,176-198,265-287,312-334,341-363,368-390
Sequence
Target Sequence 
>C. ELEGANS:181944_AT
ggggtctgcttttggctgtgaacccctttaccctagtgctcaaagtaagatgtgcaaggc
aaatttcaccgactttgaacaaagaattcgcaaggaaaagccggactttgcgtttatttt
cacacgctacatgtcaatcggcgccccattcccaaaaaacgtatcaagttttgaccagga
ccccatctaccaaaccatgaaggagcaaatgttgaaattcatttcgaatatcaagtacaa
actgtatatacttgacgccctgccacgtattaatcggggtgtcataaaccaactagccaa
gctgttcagaaatcatacggatccggtggctattgatgacatgttcgtccggcctgccga
gtatgaaatggcccgaaaacgacatgctcaattagtcaaagactgcaagggaaaatgtat
aatggtggattatgtgccagaattctacaatacggaaacaggaacgtttcggtattttga
cgaacggggcttctcgtattggacaacacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGTCTGCTTTTGGCTGTGAACCC 636 495 1545 Antisense
GTGCAAGGCAAATTTCACCGACTTT 309 481 1596 Antisense
CGGACTTTGCGTTTATTTTCACACG 344 243 1646 Antisense
ACACGCTACATGTCAATCGGCGCCC 30 111 1666 Antisense
TATCAAGTTTTGACCAGGACCCCAT 336 659 1706 Antisense
AAACTGTATATACTTGACGCCCTGC 532 127 1783 Antisense
ACGCCCTGCCACGTATTAATCGGGG 683 89 1799 Antisense
TATTGATGACATGTTCGTCCGGCCT 340 665 1875 Antisense
TTCGTCCGGCCTGCCGAGTATGAAA 452 695 1888 Antisense
TGGCCCGAAAACGACATGCTCAATT 675 543 1913 Antisense
GGGCTTCTCGTATTGGACAACACCT 259 493 2031 Antisense
Sequence Source Affymetrix Proprietary Database