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[181943_at]

Description F58E1.2 /REP_DB=WormBase Gene ID /WP=CE11374 /TR=Q9TZG5 /GB=AAC67481.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 10.5
(-2.8)
A 		8.3
(-3)
A 		13.9
(-2.6)
A 		95.1
(3)
P 		87
B 19.7
(-2)
A 		23.7
(0.5)
A 		18
(-3)
A 		27.8
(3)
A 		10
C 4.2
(-3)
A 		4.4
(-3)
A 		8.3
(-2.9)
A 		180.2
(3)
P 		176
avr 11.5
(-3) 		12.1
(-3) 		13.4
(-2.9) 		101
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 34.5
(1.1)
A 		4.7
(-3)
A 		48.2
(3)
A 		13.8
(-1.7)
A 		21.2
(-0.7)
A 		10.1
(-2.3)
A 		44
B 32.2
(3)
A 		10.1
(-1.7)
A 		7.5
(-2.2)
A 		3.8
(-3)
A 		28.5
(2.2)
A 		5.7
(-2.6)
A 		28
C 10.9
(-2.1)
A 		46.3
(3)
A 		4.6
(-3)
A 		4.3
(-3)
A 		11.4
(-2)
A 		43
(2.5)
A 		42
avr 25.9
(3) 		20.4
(1.2) 		20.1
(1.1) 		7.3
(-3) 		20.4
(1.2) 		19.6
(1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 3.8
(-2)
A 		1.8
(-3)
A 		3.6
(-2.1)
A 		13.9
(3)
P 		12
B 6.3
(3)
A 		5.9
(1.9)
A 		4.2
(-3)
A 		5.9
(1.9)
A 		2
C 1.4
(-3)
A 		1.3
(-3)
A 		2.9
(-2.7)
A 		30.4
(3)
P 		29
avr 3.8
(-2.6) 		3
(-3) 		3.6
(-2.7) 		16.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.4
(0.2)
A 		1.7
(-3)
A 		10.5
(3)
A 		3.5
(-1.8)
A 		6.4
(0.2)
A 		2.5
(-2.5)
A 		9
B 11.2
(2.8)
A 		3.4
(-1.6)
A 		1.8
(-2.5)
A 		1
(-3)
A 		11.6
(3)
A 		2.1
(-2.4)
A 		11
C 4
(-1.6)
A 		14.1
(2.9)
A 		1.2
(-2.9)
A 		0.9
(-3)
A 		3.7
(-1.8)
A 		14.4
(3)
A 		14
avr 7.2
(3) 		6.4
(2.1) 		4.5
(-0) 		1.8
(-3) 		7.2
(3) 		6.3
(2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5423
Sequence Type Exemplar sequence
Representative Public ID F58E1.2 NCBI
Target Description F58E1.2 /REP_DB=WormBase Gene ID /WP=CE11374 /TR=Q9TZG5 /GB=AAC67481.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061639(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061639 NCBI Caenorhabditis elegans F58E1.2 (F58E1.2) mRNA, complete cds. 11/11 None
SNAP00000040826 ENSEMBL cdna:SNAP chromosome:CEL140:II:1684051:1685034:1 11/11 None
F58E1.2 ENSEMBL cdna:known chromosome:CEL140:II:1684051:1684862:1 gene:F58E1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040838 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1684049-1684861(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.2
Entrez Gene 186507 Entrez gene
SwissProt Q9TZG5 EMBL-EBI
WormBase CE11374 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67481 Hypothetical protein F58E1.2 [Caenorhabditis elegans] ref|NP_494040.1| F58E1.2 [Caenorhabditis elegans] 1.0E-143
blast AAC67481 Hypothetical protein F58E1.2 [Caenorhabditis elegans] ref|NP_494040.1| F58E1.2 [Caenorhabditis elegans] 1.0E-115
blast AAC67480 Hypothetical protein F58E1.3 [Caenorhabditis elegans] ref|NP_494039.1| F58E1.3 [Caenorhabditis elegans] 2.0E-97
blast AAC67480 Hypothetical protein F58E1.3 [Caenorhabditis elegans] ref|NP_494039.1| F58E1.3 [Caenorhabditis elegans] 1.0E-71
blast AAB37917 Hypothetical protein ZC204.8 [Caenorhabditis elegans] ref|NP_494023.1| ZC204.8 [Caenorhabditis elegans] 4.0E-39
blast CAB60508 Hypothetical protein Y56A3A.14 [Caenorhabditis elegans] ref|NP_499546.1| Y56A3A.14 [Caenorhabditis elegans] 3.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-6
Sequence
Target Sequence 
>C. ELEGANS:181943_AT
atgacgtcatctcttcagttagacatatcaaacgagtttcaaattgttgaattttttttc
aaaatggatcctcactatcagagtgtagaagtacgtcaacgctctaacaacaggtcaaat
acatctacagaacttagtataccgggagtctcagtgaaattctggattgagcacatagtt
catgtattctgtaaagatcaaggtgcactgctgaaacttgaaaattcagcaggagaaaac
tttgacgaactttacgacatgattgcaaacataacaattgttcacctggaatttatgtgt
atagaacttcaagattaccatcgtctcaaactttttccttttttgaaatggttgacagtg
tatggaatggacatggctccaattagtactacaatcctaattcagaatatccaaggattg
catcttgttcatgaaataaaatggagaatcaatgatgtactaatttcaaatttttcgaat
ttcattgtttcagcaaagattttccaaacaagacctgaacctttttatgagacagtggat
aaacggagctatgccccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACGTCATCTCTTCAGTTAGACA 469 45 178 Antisense
AAAATGGATCCTCACTATCAGAGTG 153 133 238 Antisense
GTACGTCAACGCTCTAACAACAGGT 214 457 268 Antisense
GAACTTAGTATACCGGGAGTCTCAG 650 349 307 Antisense
AGATCAAGGTGCACTGCTGAAACTT 137 67 372 Antisense
GACGAACTTTACGACATGATTGCAA 336 379 421 Antisense
GAACTTCAAGATTACCATCGTCTCA 201 351 481 Antisense
TTACCATCGTCTCAAACTTTTTCCT 294 679 492 Antisense
GACATGGCTCCAATTAGTACTACAA 286 369 547 Antisense
GATTTTCCAAACAAGACCTGAACCT 316 429 675 Antisense
TGGATAAACGGAGCTATGCCCCGCC 48 551 713 Antisense
Sequence Source Affymetrix Proprietary Database